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NC_048756.1__YP_009844609.1__HWC12_gp006__00006
Bact-VirNC_048756.1__YP_009844609.1__HWC12_gp006__00006
Identity
- Accession:
- NC_048756 ↗
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Taxonomy
TaxID: 2557579
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-35
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.84 | 64.0 | 4.71e-01 | 85.7% | 31.9% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.82 | 70.0 | 4.87e-01 | 100.0% | 73.7% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.78 | 60.0 | 4.00e-01 | 94.3% | 21.5% |
| 2pmyA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.77 | 64.0 | 5.00e-01 | 94.3% | 60.3% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.75 | 54.0 | 4.06e-01 | 82.9% | 31.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 55.0 | 4.47e-01 | 91.4% | 42.3% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.72 | 55.0 | 3.67e-01 | 91.4% | 20.4% |
| 1l8qA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 60.0 | 5.46e-01 | 97.1% | 75.5% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.72 | 53.0 | 3.88e-01 | 88.6% | 28.0% |
| 3ukvC01 | 1.10.1200.260 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.71 | 55.0 | 5.64e-01 | 88.6% | 97.0% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.71 | 57.0 | 5.21e-01 | 97.1% | 66.7% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.71 | 59.0 | 4.34e-01 | 100.0% | 50.0% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.70 | 58.0 | 3.94e-01 | 100.0% | 26.1% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.70 | 55.0 | 4.98e-01 | 85.7% | 78.7% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.70 | 57.0 | 3.45e-01 | 100.0% | 50.7% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.69 | 56.0 | 3.34e-01 | 97.1% | 97.4% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 51.0 | 4.68e-01 | 91.4% | 64.2% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.68 | 53.0 | 3.47e-01 | 94.3% | 19.8% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.68 | 52.0 | 3.31e-01 | 88.6% | 16.7% |
| 4ga4A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.68 | 52.0 | 3.07e-01 | 85.7% | 24.9% |
| 2ib1A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.67 | 52.0 | 4.01e-01 | 94.3% | 36.3% |
| 2kilA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.66 | 48.0 | 3.18e-01 | 88.6% | 57.5% |
| 2ba3A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.66 | 47.0 | 5.00e-01 | 88.6% | 93.1% |
| 2px7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.65 | 55.0 | 3.41e-01 | 97.1% | 49.3% |
| 1mv8A03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 51.0 | 3.25e-01 | 94.3% | 84.2% |
| 2yxzA02 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.64 | 54.0 | 3.53e-01 | 100.0% | 54.9% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 44.0 | 4.21e-01 | 77.1% | 59.6% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.63 | 46.0 | 4.66e-01 | 88.6% | 83.3% |
| 3d59A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 45.0 | 2.64e-01 | 88.6% | 69.4% |
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 48.0 | 3.87e-01 | 88.6% | 40.7% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.61 | 45.0 | 3.64e-01 | 91.4% | 38.7% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 3.99e-01 | 88.6% | 76.2% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 45.0 | 4.00e-01 | 100.0% | 56.1% |
| 1s3jA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.90e-01 | 88.6% | 73.4% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 41.0 | 3.98e-01 | 85.7% | 61.7% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.25e-01 | 88.6% | 49.0% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 48.0 | 3.37e-01 | 100.0% | 48.8% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 46.0 | 2.85e-01 | 100.0% | 94.2% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 38.0 | 3.71e-01 | 77.1% | 80.5% |
| 2cw7A04 | 1.10.8.1330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Intein homing endonuclease, domain III | 0.52 | 41.0 | 3.61e-01 | 88.6% | 96.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035909 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.92 | 78.0 | 4.72e-01 | 91.4% | 16.8% |
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.88 | 74.0 | 7.41e-01 | 94.3% | 97.1% |
| 3400018 | 109.27.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BTB | 0.86 | 69.0 | 4.11e-01 | 91.4% | 12.9% |
| 4394488 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.86 | 70.0 | 5.11e-01 | 91.4% | 37.8% |
| 3278087 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.84 | 63.0 | 4.47e-01 | 85.7% | 28.2% |
| 4965909 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 66.0 | 4.77e-01 | 88.6% | 92.6% |
| 4020233 | 101.42.1.0 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins | 0.83 | 67.0 | 5.88e-01 | 94.3% | 61.8% |
| 3349555 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.82 | 63.0 | 5.85e-01 | 85.7% | 68.9% |
| 4941136 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.81 | 64.0 | 4.04e-01 | 91.4% | 18.4% |
| 4626401 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.80 | 60.0 | 5.78e-01 | 82.9% | 72.5% |
| 3931838 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 62.0 | 5.44e-01 | 91.4% | 60.0% |
| 3924925 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.78 | 63.0 | 4.42e-01 | 94.3% | 80.9% |
| 3200645 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.78 | 66.0 | 4.47e-01 | 100.0% | 31.5% |
| 3941718 | 185.1.2.0 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA | 0.77 | 65.0 | 5.20e-01 | 97.1% | 48.6% |
| 3282777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 60.0 | 4.52e-01 | 94.3% | 90.0% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.74 | 61.0 | 4.16e-01 | 100.0% | 27.1% |
| 5079692 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.73 | 55.0 | 3.99e-01 | 94.3% | 30.4% |
| 5079505 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 59.0 | 3.96e-01 | 97.1% | 55.9% |
| 5013699 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 60.0 | 4.06e-01 | 100.0% | 60.0% |
| 3247190 | 397.7.1.4 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX | 0.72 | 59.0 | 5.94e-01 | 100.0% | 100.0% |
| 4967852 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 58.0 | 3.98e-01 | 97.1% | 58.5% |
| 3507722 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.71 | 58.0 | 4.31e-01 | 97.1% | 40.0% |
| 3263385 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.71 | 59.0 | 4.72e-01 | 100.0% | 77.3% |
| 5061659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 4.44e-01 | 100.0% | 72.0% |
| 3326759 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.69 | 55.0 | 4.44e-01 | 97.1% | 45.3% |
| 3406012 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.69 | 56.0 | 4.85e-01 | 100.0% | 68.3% |
| 4380785 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.68 | 50.0 | 3.06e-01 | 94.3% | 12.9% |
| 5013590 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.66 | 48.0 | 4.52e-01 | 97.1% | 62.2% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 50.0 | 4.47e-01 | 97.1% | 56.4% |
| 4246280 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.65 | 51.0 | 3.28e-01 | 100.0% | 17.6% |
| 3931118 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.65 | 51.0 | 4.32e-01 | 94.3% | 50.8% |
| 5001070 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.65 | 52.0 | 3.19e-01 | 100.0% | 50.2% |
| 3312882 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.65 | 47.0 | 4.85e-01 | 94.3% | 100.0% |
| 3229130 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 49.0 | 4.49e-01 | 91.4% | 64.0% |
| 2081534 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.62 | 50.0 | 3.98e-01 | 97.1% | 44.3% |
| 3507787 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 47.0 | 4.31e-01 | 88.6% | 64.0% |