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NC_048756.1__YP_009844696.1__HWC12_gp093__00093

Bact-Vir

NC_048756.1__YP_009844696.1__HWC12_gp093__00093

Identity

Accession:
NC_048756 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 4.69e-01 70.7% 61.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 47.0 5.26e-01 70.7% 84.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 46.0 5.40e-01 70.7% 96.0%
2iw5B00 1.20.58.1880 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 47.0 3.88e-01 72.0% 38.3%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.23e-01 70.7% 94.2%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 5.04e-01 70.7% 89.1%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 46.0 5.24e-01 72.0% 98.1%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.68 48.0 3.94e-01 76.0% 88.7%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 5.11e-01 70.7% 98.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 41.0 4.33e-01 70.7% 68.7%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.92e-01 70.7% 92.6%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.66 50.0 4.09e-01 81.3% 87.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 47.0 4.25e-01 74.7% 91.3%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 50.0 4.55e-01 81.3% 98.0%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 47.0 4.41e-01 76.0% 96.8%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 5.03e-01 72.0% 100.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 4.05e-01 70.7% 58.6%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.23e-01 70.7% 79.0%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.44e-01 70.7% 83.1%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.01e-01 70.7% 66.7%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.26e-01 78.7% 83.0%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 37.0 4.07e-01 72.0% 75.0%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.93e-01 100.0% 88.9%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 41.0 4.16e-01 70.7% 100.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.97e-01 90.7% 100.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.69e-01 86.7% 89.2%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.54e-01 74.7% 56.0%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 4.33e-01 70.7% 95.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.42e-01 92.0% 76.2%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 48.0 4.31e-01 90.7% 99.1%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.65e-01 92.0% 93.8%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 36.0 4.29e-01 73.3% 100.0%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 47.0 3.82e-01 90.7% 66.0%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.64e-01 92.0% 98.4%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.63e-01 100.0% 88.0%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 50.0 4.03e-01 98.7% 66.0%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.45e-01 94.7% 83.7%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.20e-01 81.3% 50.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.53 45.0 3.81e-01 100.0% 55.7%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.52 42.0 3.93e-01 96.0% 75.2%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.51 41.0 3.27e-01 88.0% 63.3%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 41.0 2.96e-01 96.0% 90.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071071 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 52.0 5.44e-01 73.3% 72.9%
4992849 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.79 50.0 4.88e-01 73.3% 60.0%
3798378 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 52.0 5.29e-01 72.0% 69.3%
5030797 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.75 47.0 4.41e-01 73.3% 52.2%
3707219 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.75 49.0 4.16e-01 72.0% 41.7%
4992527 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.75 47.0 4.66e-01 73.3% 60.0%
4971448 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 45.0 4.55e-01 70.7% 60.0%
5007028 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 46.0 5.24e-01 70.7% 87.3%
3191582 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.72 49.0 4.07e-01 70.7% 79.2%
4998812 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 46.0 4.92e-01 70.7% 76.9%
3793383 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 45.0 4.82e-01 72.0% 75.4%
4938759 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.70 49.0 5.66e-01 81.3% 100.0%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 44.0 4.82e-01 70.7% 80.0%
3800176 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 45.0 4.32e-01 72.0% 58.8%
4530329 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.69 50.0 5.50e-01 78.7% 95.0%
4174590 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.68 47.0 4.97e-01 73.3% 83.1%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.68 59.0 5.68e-01 94.7% 82.4%
4863786 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.68 45.0 5.00e-01 70.7% 92.7%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 47.0 4.34e-01 72.0% 84.2%
3562851 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.68 56.0 4.46e-01 89.3% 69.7%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.68 51.0 5.12e-01 78.7% 82.7%
4241531 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 50.0 5.17e-01 98.7% 84.3%
3711347 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.67 56.0 4.47e-01 89.3% 69.3%
4350602 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.67 49.0 5.19e-01 78.7% 87.7%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 52.0 4.92e-01 84.0% 87.8%
5038629 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.66 41.0 4.77e-01 70.7% 94.0%
4950777 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.66 49.0 5.14e-01 78.7% 87.1%
3383803 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.66 48.0 4.31e-01 74.7% 83.0%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 43.0 4.00e-01 72.0% 52.6%
5013438 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.66 49.0 5.42e-01 78.7% 100.0%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.65 50.0 4.64e-01 82.7% 80.0%
3410592 101.1.8.25 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_psq 0.65 39.0 4.43e-01 72.0% 81.8%
3259994 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.65 55.0 4.54e-01 92.0% 76.9%
3989117 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.65 49.0 4.47e-01 81.3% 97.0%
4533441 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.64 48.0 4.49e-01 81.3% 81.1%
3595356 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.64 54.0 4.51e-01 90.7% 60.0%
3656429 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.64 48.0 3.52e-01 81.3% 70.7%
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.63 49.0 4.66e-01 85.3% 86.7%
3448782 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.63 46.0 4.18e-01 77.3% 86.0%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.63 49.0 4.40e-01 85.3% 74.3%
3260056 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 47.0 4.30e-01 82.7% 98.0%
3978422 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.61 42.0 4.71e-01 70.7% 98.2%
3887530 101.1.10.41 alpha arrays › HTH › HTH › Cyclin-like › HTH_Tnp_4 0.61 48.0 4.57e-01 86.7% 77.8%
5064868 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.61 49.0 4.59e-01 85.3% 76.7%
3971977 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 46.0 4.53e-01 85.3% 76.2%
3883738 101.1.3.20 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_4 0.61 48.0 4.56e-01 86.7% 77.8%
5029686 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.60 49.0 4.90e-01 85.3% 89.3%
4966195 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 44.0 4.56e-01 80.0% 97.1%
3892817 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.59 49.0 4.63e-01 90.7% 81.1%
4245572 101.1.8.16 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_40 0.58 43.0 4.41e-01 84.0% 85.7%
3815501 101.1.10.37 alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.58 44.0 4.17e-01 85.3% 77.9%
3376425 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.57 45.0 4.35e-01 86.7% 89.4%
3919175 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.57 46.0 4.10e-01 89.3% 84.5%
3483301 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.57 50.0 4.02e-01 100.0% 60.0%
3978988 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.57 41.0 3.21e-01 78.7% 60.0%
3277186 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.56 48.0 4.09e-01 96.0% 65.6%
3588540 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.56 38.0 4.24e-01 70.7% 96.4%
3967748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.56 45.0 4.31e-01 92.0% 76.5%
3963064 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.56 39.0 3.58e-01 73.3% 60.0%
3946248 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.55 48.0 4.39e-01 97.3% 78.0%
4520850 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.55 38.0 3.94e-01 72.0% 81.4%
3913655 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.54 44.0 4.35e-01 90.7% 96.2%