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NC_048756.1__YP_009844788.1__HWC12_gp132__00185

Bact-Vir

NC_048756.1__YP_009844788.1__HWC12_gp132__00185

Identity

Accession:
NC_048756 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac65v151

TaxID: 2557579

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-107
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 5.08e-01 80.0% 96.8%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 5.26e-01 94.3% 97.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.92e-01 94.3% 96.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 36.0 4.75e-01 75.2% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 44.0 4.26e-01 94.3% 62.6%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 3.91e-01 80.0% 54.3%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 46.0 3.92e-01 78.1% 98.3%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 37.0 4.06e-01 81.9% 71.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 36.0 4.46e-01 71.4% 98.3%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 3.71e-01 80.0% 50.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.75e-01 95.2% 97.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.59e-01 73.3% 95.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.35e-01 77.1% 80.2%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 43.0 3.88e-01 76.2% 79.4%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 38.0 3.94e-01 81.0% 71.6%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 51.0 4.01e-01 99.0% 76.2%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 37.0 3.27e-01 77.1% 46.8%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.79e-01 71.4% 74.3%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.54 33.0 3.33e-01 71.4% 59.6%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.73e-01 82.9% 86.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 38.0 4.01e-01 92.4% 83.5%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 40.0 4.24e-01 78.1% 100.0%
4gn1C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.39e-01 74.3% 76.7%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 39.0 4.00e-01 78.1% 85.6%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.22e-01 70.5% 51.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.79e-01 81.9% 84.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.73e-01 75.2% 88.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.41e-01 77.1% 90.4%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.35e-01 78.1% 66.7%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 32.0 3.71e-01 81.0% 91.7%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 31.0 3.29e-01 78.1% 68.9%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.08e-01 76.2% 55.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 3.33e-01 71.4% 86.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 35.0 5.34e-01 73.3% 97.8%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 39.0 4.98e-01 78.1% 91.9%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 5.38e-01 90.5% 100.0%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 37.0 4.92e-01 73.3% 94.8%
3960362 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 42.0 4.09e-01 86.7% 54.8%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 43.0 4.84e-01 79.0% 81.2%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.69 43.0 3.58e-01 86.7% 36.7%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 37.0 4.87e-01 72.4% 100.0%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 32.0 4.33e-01 71.4% 87.3%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 35.0 3.95e-01 75.2% 64.7%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 40.0 3.16e-01 83.8% 30.9%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.88e-01 96.2% 94.3%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 35.0 4.68e-01 75.2% 100.0%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 46.0 4.76e-01 95.2% 77.0%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 37.0 4.39e-01 77.1% 82.9%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 37.0 4.70e-01 78.1% 98.3%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 45.0 4.86e-01 95.2% 85.6%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.64 36.0 3.93e-01 76.2% 67.1%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 36.0 4.69e-01 79.0% 100.0%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.55e-01 95.2% 71.3%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 44.0 4.67e-01 96.2% 84.4%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 44.0 4.69e-01 95.2% 85.6%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 45.0 4.90e-01 95.2% 92.9%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 41.0 4.68e-01 95.2% 90.0%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.82e-01 95.2% 88.9%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 42.0 4.45e-01 95.2% 81.1%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 44.0 4.68e-01 95.2% 86.7%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 39.0 4.48e-01 78.1% 89.3%
3768094 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 44.0 4.42e-01 95.2% 75.2%
3519597 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 45.0 4.71e-01 95.2% 86.3%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 4.54e-01 95.2% 85.6%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 36.0 4.34e-01 74.3% 96.8%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 4.47e-01 95.2% 81.1%
3620905 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 41.0 4.42e-01 96.2% 82.2%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.60 35.0 4.35e-01 77.1% 95.4%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 37.0 4.26e-01 74.3% 86.7%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 4.62e-01 95.2% 90.6%
3504760 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 36.0 3.88e-01 80.0% 70.0%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 42.0 4.49e-01 95.2% 85.6%
3508415 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 42.0 3.97e-01 95.2% 60.0%
3711384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 3.92e-01 72.4% 74.1%
3999723 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 3.82e-01 95.2% 53.3%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.59 40.0 4.50e-01 84.8% 91.3%
3967347 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 38.0 4.37e-01 74.3% 93.3%
3740052 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.58 40.0 3.84e-01 70.5% 75.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.40e-01 83.8% 37.8%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 39.0 4.46e-01 77.1% 96.2%
3642001 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 36.0 4.32e-01 72.4% 98.6%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 33.0 3.65e-01 74.3% 72.9%
3696719 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 43.0 4.15e-01 83.8% 100.0%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 34.0 4.07e-01 72.4% 94.3%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 44.0 4.35e-01 85.7% 94.5%
4266069 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 39.0 3.98e-01 75.2% 100.0%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.54 45.0 4.07e-01 92.4% 78.7%
4391878 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 44.0 3.80e-01 85.7% 81.9%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 37.0 3.74e-01 70.5% 72.8%
3971620 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 43.0 3.74e-01 83.8% 81.3%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.53 42.0 4.00e-01 82.9% 80.8%
3262455 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.53 39.0 4.04e-01 77.1% 99.0%
3689576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.94e-01 92.4% 66.5%
3298989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.14e-01 91.4% 80.9%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 39.0 3.63e-01 99.0% 61.5%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 35.0 3.66e-01 75.2% 73.0%
3724971 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 44.0 4.40e-01 93.3% 95.5%
3662854 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.51 42.0 3.56e-01 86.7% 92.1%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.51 44.0 3.91e-01 92.4% 83.4%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 37.0 4.01e-01 79.0% 94.1%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 39.0 3.03e-01 81.0% 75.8%