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NC_048756.1__YP_009844789.1__HWC12_gp131__00186

Bact-Vir

NC_048756.1__YP_009844789.1__HWC12_gp131__00186

Identity

Accession:
NC_048756 ↗
Kingdom:
phage

Quality

60.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac65v151

TaxID: 2557579

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-74
PDB
Domain cluster: rep: S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00237__D80-126
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04434.23 best SWIM 24.5 2.20e-05 71.9% 86.8%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 36.0 2.78e-01 78.9% 22.3%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.69 56.0 4.42e-01 100.0% 42.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 38.0 4.07e-01 86.0% 62.5%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 37.0 3.26e-01 91.2% 34.9%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 38.0 3.50e-01 93.0% 43.8%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 41.0 4.77e-01 94.7% 94.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.64 43.0 4.20e-01 96.5% 62.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.00e-01 84.2% 68.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.01e-01 91.2% 70.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 38.0 3.57e-01 96.5% 50.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 3.42e-01 86.0% 46.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 3.79e-01 91.2% 61.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 37.0 3.56e-01 96.5% 51.5%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 3.01e-01 91.2% 87.5%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 35.0 3.26e-01 91.2% 41.6%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.11e-01 96.5% 65.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 35.0 3.35e-01 86.0% 49.3%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 39.0 3.41e-01 70.2% 67.4%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.58 39.0 3.68e-01 70.2% 69.6%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 43.0 3.02e-01 84.2% 94.0%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 3.06e-01 98.2% 74.9%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.57 46.0 2.63e-01 89.5% 85.9%
1a0rB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.95e-01 94.7% 82.9%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.36e-01 75.4% 69.7%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.35e-01 73.7% 70.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.91e-01 96.5% 69.3%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.75e-01 89.5% 92.9%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.69e-01 91.2% 56.4%
3tlqA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 46.0 3.08e-01 100.0% 26.3%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 41.0 3.22e-01 87.7% 54.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.61e-01 78.9% 79.5%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.80e-01 98.2% 69.2%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.73e-01 96.5% 64.6%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.81e-01 96.5% 89.8%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.71e-01 91.2% 29.2%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 32.0 3.31e-01 89.5% 66.0%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 3.15e-01 93.0% 96.5%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.44e-01 93.0% 55.6%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 41.0 2.98e-01 89.5% 71.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3194105 1195.1.1.0 ↗ a+b complex topology › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 0.80 72.0 5.01e-01 98.2% 71.0%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 40.0 4.35e-01 91.2% 68.8%
4128902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 40.0 4.24e-01 93.0% 68.0%
4981036 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 36.0 3.97e-01 84.2% 73.3%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.60 37.0 3.54e-01 100.0% 50.0%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 38.0 3.66e-01 91.2% 56.9%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.59 38.0 3.73e-01 100.0% 60.0%
3259818 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.58 44.0 2.88e-01 87.7% 48.0%
4947543 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 39.0 3.63e-01 71.9% 71.6%
3792501 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 47.0 2.99e-01 96.5% 66.6%
3510260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.93e-01 93.0% 72.1%
4996925 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 45.0 2.99e-01 96.5% 65.8%
4029129 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.90e-01 94.7% 53.0%
5002760 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.56 38.0 3.60e-01 71.9% 74.3%
3193273 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.78e-01 100.0% 35.4%
3598918 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 38.0 3.24e-01 75.4% 78.8%
3940294 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 47.0 2.73e-01 100.0% 43.3%
4147983 5.1.4.126 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Striatin 0.55 51.0 3.04e-01 100.0% 74.7%
185631 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.55 44.0 2.87e-01 96.5% 59.8%
3719349 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.70e-01 98.2% 77.2%
3994906 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.54 42.0 2.71e-01 89.5% 79.9%
3409843 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 46.0 2.72e-01 94.7% 97.0%
3275111 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.54 42.0 2.66e-01 89.5% 39.4%
3627094 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.84e-01 96.5% 90.3%
3409750 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.53 46.0 2.66e-01 94.7% 92.2%
3629643 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.53 43.0 2.73e-01 98.2% 54.6%
3275427 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 2.73e-01 100.0% 73.8%
4991452 304.37.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.53 45.0 3.63e-01 93.0% 84.8%
3384630 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 48.0 3.03e-01 100.0% 74.5%
3708672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 42.0 3.76e-01 93.0% 92.9%
3494509 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.51 45.0 2.60e-01 100.0% 85.5%
3176388 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.62e-01 94.7% 94.6%
3800306 5.1.4.530 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Str_synth, SSL_N 0.51 44.0 2.73e-01 100.0% 86.9%
3600593 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.50 45.0 2.73e-01 100.0% 76.2%
3552883 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.50 41.0 3.85e-01 100.0% 74.7%
D2 high residues 81-171
PDB