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NC_048756.1__YP_009844793.1__HWC12_gp127__00190

Bact-Vir

NC_048756.1__YP_009844793.1__HWC12_gp127__00190

Identity

Accession:
NC_048756 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac65v151

TaxID: 2557579

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-135
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 4.09e-01 99.3% 50.3%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 43.0 4.30e-01 98.5% 66.7%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 4.18e-01 99.3% 57.0%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 3.95e-01 99.3% 50.5%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.97e-01 99.3% 51.2%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 3.54e-01 100.0% 42.2%
6nu8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 42.0 4.21e-01 99.3% 68.5%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 42.0 3.28e-01 97.0% 35.0%
1sil000 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 53.0 3.89e-01 100.0% 86.6%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.59 42.0 3.67e-01 73.3% 74.5%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 3.66e-01 100.0% 49.2%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 4.17e-01 99.3% 69.6%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 51.0 3.75e-01 100.0% 84.1%
1zhsA01 3.30.1490.230 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 24.0 3.45e-01 94.8% 89.1%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 38.0 3.50e-01 99.3% 51.7%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.56 40.0 3.60e-01 99.3% 50.3%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.56 46.0 3.72e-01 88.9% 75.9%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 44.0 4.24e-01 83.7% 83.7%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.55 41.0 3.21e-01 97.8% 36.5%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.55e-01 100.0% 47.4%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 4.21e-01 84.4% 87.2%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 40.0 3.42e-01 77.8% 46.5%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.55e-01 100.0% 55.3%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.82e-01 100.0% 49.8%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.65e-01 100.0% 50.0%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 40.0 3.09e-01 77.8% 96.3%
1iugA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 37.0 4.05e-01 77.0% 87.4%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.91e-01 74.8% 81.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.89e-01 74.1% 81.7%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.86e-01 74.1% 79.1%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.91e-01 85.2% 78.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 34.0 3.87e-01 85.9% 92.6%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 41.0 3.43e-01 83.0% 77.7%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.92e-01 94.8% 75.7%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.96e-01 88.1% 48.2%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.71e-01 85.9% 81.1%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 4.07e-01 89.6% 94.1%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 3.88e-01 85.9% 89.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.68 45.0 3.07e-01 85.9% 21.2%
3425526 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.68 41.0 3.70e-01 77.8% 44.3%
1870993 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.64 46.0 4.03e-01 99.3% 49.8%
3271533 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 43.0 4.79e-01 82.2% 88.9%
3951048 331.4.1.17 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB 0.62 42.0 4.46e-01 85.9% 77.5%
1870982 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.62 45.0 3.95e-01 99.3% 50.2%
3519839 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 44.0 4.32e-01 98.5% 69.7%
2576298 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.61 43.0 4.21e-01 99.3% 66.2%
5039110 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 28.0 3.62e-01 83.7% 76.0%
5047426 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 40.0 4.38e-01 87.4% 79.1%
1159021 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 27.0 3.51e-01 84.4% 74.6%
2325452 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.60 42.0 3.50e-01 98.5% 40.3%
4013311 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.59 46.0 3.85e-01 98.5% 47.2%
4191746 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 44.0 3.85e-01 99.3% 52.0%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 40.0 4.38e-01 82.2% 84.5%
3436180 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 27.0 3.63e-01 86.7% 82.9%
4968514 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.58 41.0 4.30e-01 84.4% 78.4%
4001272 3561.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.58 52.0 3.46e-01 94.8% 31.5%
5043799 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 41.0 4.33e-01 83.7% 84.7%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 39.0 3.54e-01 100.0% 50.5%
3482455 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 40.0 3.52e-01 100.0% 48.6%
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.55 32.0 3.81e-01 70.4% 83.0%
6333 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 43.0 4.22e-01 84.4% 87.8%
5025577 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 43.0 4.23e-01 84.4% 90.3%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 38.0 3.91e-01 72.6% 78.9%
3481058 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 39.0 3.37e-01 99.3% 48.8%
3399368 9.14.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 0.52 38.0 3.86e-01 77.0% 97.8%
3212698 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 41.0 3.76e-01 85.2% 90.0%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.52 42.0 3.95e-01 87.4% 88.5%
3743698 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.51 46.0 3.51e-01 99.3% 91.4%
4466226 5087.1.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.51 31.0 3.54e-01 76.3% 79.0%
3810133 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.51 45.0 3.72e-01 100.0% 58.4%
5023993 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.51 42.0 3.59e-01 88.1% 65.9%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.50 42.0 4.23e-01 90.4% 90.4%
5036836 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.50 38.0 3.24e-01 80.7% 85.7%
D2 medium residues 136-185
PDB
D3 medium residues 186-264
PDB