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NC_048756.1__YP_009844801.1__HWC12_gp119__00198

Bact-Vir

NC_048756.1__YP_009844801.1__HWC12_gp119__00198

Identity

Accession:
NC_048756 ↗
Kingdom:
phage

Quality

48.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac65v151

TaxID: 2557579

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-173
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.69 42.0 3.98e-01 98.5% 50.3%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 37.0 4.42e-01 92.5% 94.5%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 38.0 3.78e-01 89.6% 62.0%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 48.0 3.74e-01 88.1% 83.0%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.28e-01 74.6% 95.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 4.29e-01 92.5% 84.5%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.55 44.0 3.89e-01 83.6% 92.2%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 32.0 3.85e-01 83.6% 91.0%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.53 45.0 3.96e-01 91.0% 97.9%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 38.0 2.72e-01 73.9% 45.8%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 39.0 2.80e-01 91.0% 28.0%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.52 38.0 3.74e-01 95.5% 69.3%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 30.0 3.45e-01 90.3% 78.9%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 38.0 3.96e-01 76.9% 100.0%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.50 39.0 3.42e-01 82.8% 65.9%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 34.0 2.88e-01 71.6% 39.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
876 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.69 42.0 3.94e-01 98.5% 49.1%
3396245 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.69 34.0 3.04e-01 76.1% 33.7%
3270919 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.68 40.0 4.30e-01 89.6% 67.8%
4026594 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.67 41.0 4.37e-01 89.6% 69.5%
3352272 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.64 38.0 4.06e-01 89.6% 67.8%
3727346 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.60 46.0 3.32e-01 78.4% 90.6%
5003221 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 41.0 4.37e-01 93.3% 80.0%
1005530 12.3.1.11 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Baculo_E66 0.57 48.0 3.94e-01 91.0% 98.0%
3263743 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.56 40.0 4.11e-01 93.3% 77.6%
5051273 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.56 46.0 3.76e-01 88.8% 97.2%
3952661 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.55 41.0 3.81e-01 87.3% 61.8%
4208434 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.55 45.0 3.50e-01 88.8% 83.4%
2604208 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 40.0 2.88e-01 76.1% 71.0%
1565067 9.23.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.52 39.0 4.11e-01 93.3% 86.0%
3807906 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.52 40.0 3.41e-01 89.6% 49.8%
3819740 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.52 35.0 4.03e-01 97.0% 100.0%
177347 7579.1.1.45 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.52 39.0 2.77e-01 76.9% 82.5%
3456597 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.50 41.0 3.81e-01 100.0% 69.0%
D2 medium residues 222-356
PDB