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NC_048756.1__YP_009844804.1__HWC12_gp116__00201
Bact-VirNC_048756.1__YP_009844804.1__HWC12_gp116__00201
Identity
- Accession:
- NC_048756 ↗
- Kingdom:
- phage
Quality
75.2
mean pLDDT
Taxonomy
TaxID: 2557579
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-59
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z6oA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 75.0 | 4.74e-01 | 100.0% | 22.6% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 66.0 | 6.52e-01 | 100.0% | 98.0% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 66.0 | 6.00e-01 | 100.0% | 74.6% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 65.0 | 4.91e-01 | 100.0% | 41.1% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.75 | 63.0 | 3.70e-01 | 100.0% | 11.4% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.75 | 62.0 | 5.76e-01 | 100.0% | 90.2% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.74 | 61.0 | 4.63e-01 | 100.0% | 49.6% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.73 | 59.0 | 5.02e-01 | 95.6% | 61.7% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 63.0 | 5.76e-01 | 100.0% | 75.4% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 4.86e-01 | 97.8% | 74.5% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 59.0 | 5.29e-01 | 100.0% | 77.9% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.70 | 58.0 | 5.20e-01 | 100.0% | 86.6% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 57.0 | 4.47e-01 | 100.0% | 42.6% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 57.0 | 5.28e-01 | 100.0% | 73.8% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 54.0 | 5.00e-01 | 100.0% | 70.8% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 54.0 | 4.05e-01 | 100.0% | 36.7% |
| 2n04A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.66 | 54.0 | 4.28e-01 | 100.0% | 43.8% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.65 | 55.0 | 4.08e-01 | 100.0% | 35.3% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 52.0 | 5.12e-01 | 100.0% | 90.2% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.64 | 50.0 | 4.69e-01 | 100.0% | 98.4% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 51.0 | 4.48e-01 | 95.6% | 98.6% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 51.0 | 4.18e-01 | 100.0% | 48.5% |
| 2ctqA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.63 | 50.0 | 4.15e-01 | 97.8% | 51.1% |
| 4dgwB01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.62 | 45.0 | 4.36e-01 | 86.7% | 70.0% |
| 5w6lA01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 45.0 | 2.87e-01 | 82.2% | 74.0% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 3.71e-01 | 100.0% | 36.6% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.58 | 49.0 | 3.55e-01 | 100.0% | 31.9% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.57 | 46.0 | 3.83e-01 | 100.0% | 68.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3683909 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.83 | 70.0 | 5.19e-01 | 100.0% | 37.0% |
| 3304429 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.82 | 73.0 | 6.42e-01 | 100.0% | 70.8% |
| 3318544 | 150.1.1.78 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rx_N | 0.81 | 70.0 | 5.86e-01 | 100.0% | 57.5% |
| 3855328 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.77 | 65.0 | 5.19e-01 | 100.0% | 60.0% |
| 4009811 | 101.31.1.1 ↗ | alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase | 0.75 | 65.0 | 5.00e-01 | 100.0% | 42.9% |
| 4182426 | 192.6.1.2 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_fung | 0.74 | 60.0 | 5.91e-01 | 100.0% | 89.6% |
| 4963338 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 61.0 | 5.68e-01 | 100.0% | 76.7% |
| 3617959 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.72 | 59.0 | 4.70e-01 | 100.0% | 44.7% |
| 3493358 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.72 | 60.0 | 4.91e-01 | 100.0% | 71.1% |
| 3573745 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.72 | 59.0 | 4.09e-01 | 100.0% | 28.2% |
| 3596143 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.68 | 58.0 | 5.07e-01 | 100.0% | 97.1% |
| 3605393 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.67 | 56.0 | 4.69e-01 | 100.0% | 80.0% |
| 3980942 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 51.0 | 4.14e-01 | 100.0% | 47.0% |
| 3789564 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.63 | 50.0 | 4.03e-01 | 100.0% | 40.9% |
| 3167754 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.63 | 51.0 | 4.41e-01 | 100.0% | 55.0% |
| 4943288 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.56 | 45.0 | 3.00e-01 | 100.0% | 27.7% |