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NC_048757.1__YP_009844829.1__HWC13_gp020__00020

Bact-Vir

Identity

Accession:: NC_048757 ↗
Kingdom:: phage

Quality

96.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac68v161

TaxID: 2557582

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gxaE01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.73	56.0	5.17e-01	100.0%	65.8%
4nlbA02	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.68	48.0	4.11e-01	75.4%	51.1%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.68	59.0	5.20e-01	100.0%	83.7%
2c5uA02	1.10.3550.20	Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold ›	0.68	49.0	3.83e-01	100.0%	34.4%
3fblA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	52.0	4.75e-01	100.0%	64.6%
3n4eA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.64	48.0	4.02e-01	96.5%	46.2%
1rvkA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.63	48.0	3.91e-01	96.5%	42.2%
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.63	43.0	3.97e-01	73.7%	100.0%
6umqA01	1.20.930.60	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.62	43.0	3.49e-01	73.7%	88.7%
1c02A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.61	50.0	3.64e-01	93.0%	67.5%
4cs9B02	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.60	46.0	3.89e-01	89.5%	68.2%
3toyA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.60	44.0	3.52e-01	96.5%	37.0%
3k1rA01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.56	39.0	3.63e-01	96.5%	54.3%
6n2nA01	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.56	45.0	3.33e-01	96.5%	92.1%
2icwG01	1.20.120.390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	0.55	44.0	3.52e-01	91.2%	88.7%
3u3iA02	1.20.58.1110	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	41.0	3.50e-01	100.0%	56.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3180777	101.1.1.21 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5	0.89	79.0	7.33e-01	100.0%	78.6%
3721242	6026.1.1.0 ↗	alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain	0.70	60.0	5.33e-01	100.0%	94.0%
5001603	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.69	59.0	5.14e-01	100.0%	64.4%
4346470	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.67	56.0	3.66e-01	100.0%	21.1%
4582542	192.11.1.1 ↗	alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR	0.51	40.0	3.97e-01	89.5%	88.9%