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NC_048757.1__YP_009844835.1__HWC13_gp026__00026

Bact-Vir

NC_048757.1__YP_009844835.1__HWC13_gp026__00026

Identity

Accession:
NC_048757 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac68v161

TaxID: 2557582

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 48.0 5.07e-01 94.5% 83.3%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 47.0 4.86e-01 94.5% 81.8%
3wx1A00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.64 45.0 3.98e-01 74.0% 81.5%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.92e-01 95.9% 81.8%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.18e-01 98.6% 75.8%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.62 44.0 3.91e-01 75.3% 78.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.24e-01 100.0% 53.2%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.61 44.0 3.81e-01 76.7% 82.5%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 4.59e-01 90.4% 86.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.44e-01 100.0% 65.7%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.57e-01 100.0% 66.1%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.60 41.0 3.94e-01 71.2% 97.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.60 52.0 4.54e-01 100.0% 64.1%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.60 44.0 4.00e-01 94.5% 58.2%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.44e-01 100.0% 60.9%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 51.0 3.24e-01 98.6% 24.0%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 3.26e-01 98.6% 24.1%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 4.46e-01 82.2% 84.3%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.58 41.0 4.22e-01 98.6% 79.7%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.58 50.0 4.46e-01 98.6% 70.8%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.57 45.0 2.85e-01 84.9% 19.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 4.49e-01 100.0% 72.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.64e-01 82.2% 69.0%
1jb7A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 3.86e-01 100.0% 78.1%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 40.0 3.14e-01 76.7% 42.4%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 40.0 4.11e-01 76.7% 100.0%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.71e-01 82.2% 59.6%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 41.0 2.95e-01 83.6% 79.2%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.05e-01 79.5% 70.5%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.92e-01 76.7% 85.7%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 42.0 3.72e-01 90.4% 64.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.80e-01 100.0% 59.8%
1f3lA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.52 37.0 2.88e-01 76.7% 95.9%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 43.0 3.74e-01 100.0% 60.2%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.50e-01 80.8% 19.3%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 2.81e-01 76.7% 41.5%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.50 35.0 3.16e-01 76.7% 73.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900135 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 51.0 4.93e-01 95.9% 70.6%
5026090 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.68 56.0 5.59e-01 100.0% 88.0%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 5.28e-01 98.6% 87.1%
4931272 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.66 58.0 5.32e-01 100.0% 74.7%
5064103 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.66 48.0 4.93e-01 95.9% 81.4%
5039243 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 48.0 4.67e-01 95.9% 71.2%
5043209 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 58.0 4.61e-01 100.0% 50.0%
3298800 708.1.2.12 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › At4g08330 0.65 45.0 3.76e-01 71.2% 73.3%
3478713 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 53.0 4.55e-01 100.0% 55.8%
3511439 220.1.1.193 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_UBFD1_C 0.64 53.0 4.59e-01 100.0% 58.4%
4984268 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 57.0 5.18e-01 100.0% 76.0%
4963902 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 56.0 5.03e-01 100.0% 71.0%
3481698 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.63 44.0 3.74e-01 72.6% 74.2%
4034140 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 53.0 5.07e-01 100.0% 80.0%
3649429 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.63 56.0 4.25e-01 100.0% 54.1%
5059538 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.62 45.0 4.45e-01 95.9% 71.2%
3796020 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.62 55.0 4.54e-01 100.0% 65.2%
4953610 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.62 49.0 4.87e-01 95.9% 80.8%
4941253 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 55.0 5.01e-01 100.0% 75.0%
4398790 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.62 44.0 3.69e-01 74.0% 71.0%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 52.0 4.28e-01 100.0% 49.6%
5047349 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 55.0 5.08e-01 100.0% 81.1%
5039031 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 54.0 4.71e-01 98.6% 64.5%
5066117 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 55.0 5.06e-01 100.0% 87.4%
4968394 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 55.0 4.88e-01 100.0% 80.0%
4643928 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.62 47.0 3.89e-01 80.8% 88.5%
3220893 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.62 43.0 3.52e-01 72.6% 76.3%
3713382 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.62 54.0 4.83e-01 100.0% 70.5%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 54.0 4.42e-01 100.0% 53.7%
5078629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.77e-01 100.0% 74.3%
3641909 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.61 55.0 4.26e-01 100.0% 66.3%
4964806 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 54.0 4.20e-01 100.0% 45.0%
3290300 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 54.0 5.16e-01 100.0% 85.9%
4940142 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 54.0 5.14e-01 98.6% 87.1%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.56e-01 100.0% 61.7%
3586955 220.1.1.88 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF956 0.61 53.0 4.78e-01 100.0% 71.0%
3954531 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 53.0 4.87e-01 100.0% 75.8%
3275324 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 50.0 4.11e-01 100.0% 50.4%
5072932 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 42.0 4.58e-01 94.5% 93.3%
3491998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.26e-01 100.0% 63.7%
3903067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.21e-01 100.0% 59.2%
3784861 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.56 47.0 4.01e-01 98.6% 63.1%
3904562 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 47.0 4.56e-01 93.2% 86.3%
3614844 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.55 47.0 3.90e-01 98.6% 53.6%
3921621 2003.1.5.359 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth, Methyltransf_25 0.55 40.0 2.36e-01 78.1% 9.0%
3274309 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 46.0 2.74e-01 94.5% 84.6%
3461375 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.54 41.0 3.80e-01 84.9% 100.0%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 37.0 3.58e-01 71.2% 94.0%
3343783 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 43.0 2.90e-01 89.0% 93.1%
3912173 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 43.0 4.25e-01 94.5% 81.2%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 41.0 3.58e-01 86.3% 80.8%
3392142 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.54 34.0 3.76e-01 75.3% 83.6%
3806936 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 41.0 2.70e-01 84.9% 93.0%
3669025 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 2.94e-01 93.2% 23.7%
3183270 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 3.95e-01 100.0% 64.2%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.52 41.0 3.65e-01 90.4% 58.3%
3340627 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 42.0 3.07e-01 89.0% 92.4%
3392590 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 4.09e-01 94.5% 98.3%
3673069 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.51 39.0 3.45e-01 83.6% 87.3%