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NC_048757.1__YP_009844844.1__HWC13_gp035__00035
Bact-VirNC_048757.1__YP_009844844.1__HWC13_gp035__00035
Identity
- Accession:
- NC_048757 ↗
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Taxonomy
TaxID: 2557582
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-56
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.84 | 75.0 | 5.94e-01 | 100.0% | 62.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.79 | 68.0 | 5.48e-01 | 100.0% | 58.9% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.76 | 64.0 | 5.67e-01 | 100.0% | 98.6% |
| 3lazA01 | 2.30.130.110 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.75 | 58.0 | 4.87e-01 | 95.7% | 50.6% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.73 | 62.0 | 5.41e-01 | 100.0% | 98.6% |
| 6ethA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.70 | 57.0 | 4.85e-01 | 100.0% | 87.6% |
| 3g8rA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.65 | 55.0 | 4.64e-01 | 95.7% | 72.8% |
| 1ameA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.65 | 55.0 | 4.95e-01 | 95.7% | 87.9% |
| 2j5uA02 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.59 | 44.0 | 3.77e-01 | 100.0% | 47.6% |
| 1f60A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 48.0 | 3.79e-01 | 100.0% | 62.0% |
| 1c01A00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.53 | 37.0 | 3.27e-01 | 76.6% | 46.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.86 | 78.0 | 7.19e-01 | 100.0% | 84.7% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.85 | 76.0 | 5.87e-01 | 100.0% | 58.0% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 74.0 | 5.45e-01 | 100.0% | 48.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 74.0 | 6.48e-01 | 100.0% | 90.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 71.0 | 6.66e-01 | 100.0% | 93.2% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.79 | 69.0 | 6.45e-01 | 100.0% | 90.0% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.79 | 67.0 | 6.26e-01 | 97.9% | 93.3% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 70.0 | 6.10e-01 | 100.0% | 74.3% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.78 | 68.0 | 6.47e-01 | 100.0% | 96.4% |
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 69.0 | 6.04e-01 | 100.0% | 74.3% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.76 | 66.0 | 6.30e-01 | 97.9% | 90.9% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 58.0 | 5.19e-01 | 100.0% | 94.5% |
| 4046971 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.66 | 57.0 | 5.09e-01 | 95.7% | 93.8% |
| 4268048 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.65 | 55.0 | 4.93e-01 | 93.6% | 89.2% |
| 3983417 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.65 | 56.0 | 5.03e-01 | 95.7% | 93.8% |
| 3840012 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.65 | 55.0 | 5.06e-01 | 93.6% | 96.7% |
| 3283905 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.64 | 52.0 | 4.74e-01 | 100.0% | 89.9% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.63 | 51.0 | 4.58e-01 | 100.0% | 90.7% |
| 3587047 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.63 | 53.0 | 4.63e-01 | 95.7% | 77.0% |
| 3972515 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.63 | 54.0 | 4.96e-01 | 95.7% | 96.7% |
| 4219259 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.59 | 51.0 | 4.87e-01 | 100.0% | 85.5% |
| 3386406 | 10.32.1.89 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N | 0.53 | 38.0 | 2.82e-01 | 100.0% | 27.4% |
D2
high
residues 61-114
Domain cluster:
rep: OP380511.1__UXF57486.1__YPCBV1_00033__00033__D62-112
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.81 | 72.0 | 5.96e-01 | 100.0% | 58.9% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.74 | 68.0 | 5.09e-01 | 100.0% | 53.7% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.73 | 63.0 | 5.68e-01 | 98.1% | 97.3% |
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.63 | 39.0 | 3.84e-01 | 100.0% | 56.9% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.50 | 33.0 | 3.13e-01 | 70.4% | 84.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.88 | 75.0 | 7.32e-01 | 100.0% | 84.7% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.85 | 78.0 | 6.21e-01 | 100.0% | 58.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 77.0 | 7.48e-01 | 100.0% | 94.9% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 73.0 | 6.84e-01 | 98.1% | 96.9% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 72.0 | 6.58e-01 | 100.0% | 90.0% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.80 | 71.0 | 5.60e-01 | 100.0% | 51.4% |
| 5075574 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.75 | 65.0 | 5.79e-01 | 100.0% | 91.3% |
| 5025023 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.75 | 66.0 | 5.92e-01 | 100.0% | 90.7% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.74 | 64.0 | 5.87e-01 | 100.0% | 94.5% |
| 3602932 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 60.0 | 6.26e-01 | 96.3% | 98.0% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.74 | 64.0 | 5.81e-01 | 100.0% | 90.7% |
| 1176867 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 64.0 | 5.41e-01 | 100.0% | 80.2% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.72 | 63.0 | 6.15e-01 | 100.0% | 95.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.72 | 63.0 | 6.14e-01 | 100.0% | 93.3% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 58.0 | 5.84e-01 | 100.0% | 94.5% |
| 3635125 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.64 | 54.0 | 3.93e-01 | 100.0% | 63.4% |
| 3641766 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.51 | 36.0 | 3.31e-01 | 79.6% | 83.7% |
| 4389598 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 39.0 | 2.80e-01 | 100.0% | 69.8% |
| 4473605 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.50 | 39.0 | 3.47e-01 | 88.9% | 84.3% |