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NC_048757.1__YP_009844915.1__HWC13_gp106__00106

Bact-Vir

NC_048757.1__YP_009844915.1__HWC13_gp106__00106

Identity

Accession:
NC_048757 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravarandavirus› Nodularia_phage_vB_NspS-kac68v161

TaxID: 2557582

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-37
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 48.0 3.71e-01 77.1% 69.3%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 55.0 3.11e-01 88.6% 22.1%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 54.0 4.18e-01 100.0% 75.8%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.65 49.0 4.45e-01 97.1% 91.2%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 49.0 3.81e-01 94.3% 69.1%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 3.52e-01 74.3% 61.3%
5f7uA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 42.0 3.44e-01 77.1% 75.0%
5jouA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 41.0 3.34e-01 74.3% 60.8%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 44.0 2.60e-01 100.0% 15.9%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 43.0 3.79e-01 94.3% 50.0%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 44.0 3.82e-01 85.7% 87.1%
1vw4I00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.58 48.0 3.33e-01 100.0% 56.8%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 3.32e-01 82.9% 67.9%
3weoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 39.0 2.97e-01 77.1% 51.5%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.70e-01 82.9% 70.6%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.55 40.0 3.37e-01 97.1% 64.6%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 40.0 2.53e-01 91.4% 34.3%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 2.81e-01 100.0% 32.3%
3zo9B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 3.11e-01 97.1% 46.3%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 35.0 2.63e-01 100.0% 22.1%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.52 44.0 3.28e-01 100.0% 42.9%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 37.0 3.05e-01 77.1% 82.5%
4i6mD00 6.20.420.10 Special › Other non-globular › Factor Xa Inhibitor › 0.52 37.0 3.40e-01 88.6% 54.7%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.42e-01 94.3% 59.8%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 35.0 2.56e-01 100.0% 21.2%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.05e-01 88.6% 72.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.23e-01 97.1% 50.6%
5034811 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.69 56.0 4.89e-01 100.0% 60.0%
4285739 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.69 55.0 4.52e-01 100.0% 46.6%
3586741 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.69 56.0 4.74e-01 100.0% 86.2%
3394414 376.1.2.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.68 54.0 3.70e-01 100.0% 23.0%
4929230 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 51.0 4.96e-01 94.3% 77.5%
3898995 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.68 54.0 4.65e-01 100.0% 80.0%
3487738 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 50.0 4.69e-01 97.1% 64.0%
3933161 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.67 53.0 4.81e-01 100.0% 96.4%
4936660 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 51.0 4.63e-01 97.1% 60.0%
3923898 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.65 51.0 4.11e-01 94.3% 41.2%
3889754 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 52.0 4.55e-01 100.0% 88.3%
3513068 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.64 51.0 4.38e-01 100.0% 81.5%
3715795 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 49.0 3.71e-01 97.1% 71.4%
3541586 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.64 50.0 4.18e-01 100.0% 46.7%
3549345 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.64 50.0 4.46e-01 100.0% 88.3%
2404978 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.63 43.0 3.28e-01 74.3% 49.5%
3990333 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.63 48.0 4.05e-01 100.0% 69.3%
4235474 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.63 46.0 3.14e-01 91.4% 57.3%
3459484 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.62 48.0 4.32e-01 97.1% 60.0%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 46.0 4.39e-01 88.6% 68.8%
3597664 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 47.0 4.48e-01 91.4% 71.1%
5078902 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.60 49.0 3.02e-01 100.0% 64.4%
3309384 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.59 45.0 3.13e-01 100.0% 25.2%
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 43.0 3.98e-01 97.1% 60.0%
3441017 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 43.0 3.69e-01 97.1% 45.7%
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 3.85e-01 97.1% 51.4%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.58 43.0 3.98e-01 97.1% 65.5%
3897161 109.3.1.163 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.57 45.0 2.87e-01 100.0% 17.7%
3266009 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.55 41.0 3.80e-01 97.1% 65.5%
3595897 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.54 41.0 3.81e-01 100.0% 69.1%
3494230 385.1.1.0 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.54 41.0 3.48e-01 100.0% 47.1%
4177765 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 41.0 2.60e-01 100.0% 62.4%
3713555 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.54 38.0 3.09e-01 94.3% 40.0%
3607707 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.53 39.0 3.06e-01 88.6% 43.8%
4019457 213.1.1.77 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 0.52 40.0 2.60e-01 100.0% 20.0%
3593781 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.52 38.0 3.59e-01 100.0% 74.5%
3947169 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 35.0 2.53e-01 74.3% 40.7%
1731746 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.51 35.0 2.89e-01 80.0% 60.5%