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NC_048757.1__YP_009844922.1__HWC13_gp198__00113

Bact-Vir

NC_048757.1__YP_009844922.1__HWC13_gp198__00113

Identity

Accession:
NC_048757 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-125
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 59.0 6.04e-01 85.0% 82.5%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 58.0 5.54e-01 86.7% 73.2%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.73 60.0 5.17e-01 93.3% 67.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 44.0 3.50e-01 81.7% 31.1%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 52.0 5.19e-01 93.3% 75.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 55.0 5.34e-01 98.3% 75.8%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 54.0 5.19e-01 100.0% 73.1%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 43.0 5.14e-01 85.0% 97.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 53.0 5.13e-01 100.0% 74.2%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 48.0 4.59e-01 90.0% 67.1%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 5.01e-01 100.0% 72.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 44.0 3.50e-01 93.3% 35.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 4.87e-01 100.0% 76.1%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 51.0 4.77e-01 100.0% 69.9%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 52.0 4.75e-01 100.0% 68.8%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 51.0 5.00e-01 100.0% 81.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 3.87e-01 86.7% 61.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 4.16e-01 91.7% 56.3%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 4.59e-01 100.0% 70.3%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 5.06e-01 100.0% 96.5%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 4.18e-01 88.3% 70.3%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.43e-01 100.0% 69.7%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 3.71e-01 88.3% 55.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.94e-01 93.3% 67.3%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.20e-01 100.0% 76.9%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.58e-01 91.7% 90.3%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 42.0 3.13e-01 78.3% 47.4%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.41e-01 95.0% 75.7%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 44.0 4.25e-01 98.3% 74.6%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 38.0 2.34e-01 90.0% 10.6%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 40.0 3.14e-01 95.0% 34.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 4.06e-01 91.7% 76.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 42.0 4.02e-01 81.7% 71.4%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 3.40e-01 86.7% 50.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 37.0 3.57e-01 100.0% 57.3%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 3.17e-01 71.7% 57.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.55e-01 95.0% 52.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 45.0 3.84e-01 95.0% 85.6%
3aj3A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 45.0 3.00e-01 98.3% 97.1%
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.53 42.0 3.52e-01 90.0% 81.2%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 34.0 3.70e-01 83.3% 85.4%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.66e-01 96.7% 82.7%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 42.0 3.55e-01 98.3% 86.0%
5f7uA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 35.0 3.32e-01 88.3% 57.9%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.58e-01 93.3% 97.0%
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.51 35.0 3.52e-01 93.3% 69.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929230 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.88 57.0 6.75e-01 71.7% 100.0%
3487738 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.83 60.0 6.45e-01 80.0% 90.0%
3586741 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.82 61.0 5.94e-01 86.7% 72.3%
4936660 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.81 64.0 6.63e-01 83.3% 100.0%
3804854 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.79 64.0 5.10e-01 91.7% 45.2%
4285739 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.79 57.0 5.29e-01 76.7% 61.6%
3459484 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.79 60.0 6.27e-01 83.3% 89.1%
3865409 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.79 60.0 6.08e-01 88.3% 81.7%
3933161 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.78 60.0 6.23e-01 88.3% 89.1%
3923898 377.1.2.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.78 61.0 5.48e-01 90.0% 62.5%
3889754 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.76 59.0 5.98e-01 90.0% 83.3%
3990333 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.76 59.0 5.45e-01 90.0% 66.7%
3513068 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.76 59.0 5.76e-01 90.0% 76.9%
5034811 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.76 65.0 6.52e-01 91.7% 98.3%
3541586 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.76 59.0 5.47e-01 90.0% 66.7%
3887581 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.75 56.0 6.00e-01 80.0% 100.0%
3549345 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.75 58.0 5.82e-01 90.0% 83.3%
3271441 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 59.0 6.14e-01 88.3% 94.5%
3394414 376.1.2.17 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.74 65.0 4.84e-01 96.7% 50.0%
3856611 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 52.0 5.19e-01 91.7% 71.4%
3842884 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.72 52.0 4.99e-01 95.0% 67.6%
3896688 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.71 53.0 5.36e-01 95.0% 80.0%
665 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 52.0 5.04e-01 100.0% 71.6%
3894506 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 52.0 4.97e-01 100.0% 68.6%
3761120 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 51.0 4.98e-01 93.3% 72.3%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 54.0 5.19e-01 100.0% 74.3%
3228213 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.68 48.0 4.74e-01 91.7% 69.2%
5054192 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.68 49.0 4.17e-01 95.0% 47.0%
3894564 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 55.0 4.91e-01 100.0% 63.9%
3898211 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 56.0 5.20e-01 100.0% 73.0%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 53.0 5.10e-01 100.0% 75.0%
1032344 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 52.0 4.72e-01 100.0% 63.0%
3469045 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 56.0 5.22e-01 98.3% 77.3%
2388239 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 54.0 5.01e-01 100.0% 72.6%
3890480 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 53.0 4.91e-01 100.0% 70.7%
3878850 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 54.0 5.06e-01 100.0% 73.3%
3764537 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 53.0 4.83e-01 100.0% 66.3%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 50.0 4.82e-01 100.0% 72.9%
4424678 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 53.0 5.17e-01 100.0% 81.5%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.89e-01 95.0% 78.5%
3891033 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 50.0 4.73e-01 100.0% 69.9%
3911547 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 53.0 4.76e-01 100.0% 64.7%
3918073 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 52.0 4.93e-01 100.0% 77.1%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 46.0 4.50e-01 93.3% 72.3%
3825395 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 48.0 4.65e-01 86.7% 88.6%
5035086 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 42.0 4.22e-01 90.0% 70.0%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 51.0 4.46e-01 100.0% 61.1%
4940846 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 44.0 4.49e-01 80.0% 83.1%
4208450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 42.0 4.23e-01 93.3% 73.3%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 42.0 4.23e-01 88.3% 73.8%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.79e-01 91.7% 84.6%
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 41.0 4.18e-01 95.0% 75.0%
5049640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.44e-01 93.3% 81.0%
5003340 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.57e-01 86.7% 56.9%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 39.0 3.14e-01 93.3% 33.1%
1933549 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.56 38.0 3.40e-01 86.7% 50.0%
3915693 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 44.0 4.32e-01 95.0% 80.0%
4080950 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 41.0 2.90e-01 80.0% 60.5%
3475881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.84e-01 80.0% 67.1%
5007497 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 39.0 2.52e-01 81.7% 16.4%
3375457 4.1.1.159 beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 0.53 36.0 3.41e-01 71.7% 72.0%
3943027 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 4.19e-01 98.3% 98.7%
3989602 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.53 35.0 3.18e-01 70.0% 47.8%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.53 37.0 3.58e-01 75.0% 75.7%
3931076 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 43.0 3.46e-01 91.7% 47.5%
3188811 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.52 36.0 3.22e-01 76.7% 62.1%
3946546 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.51 30.0 2.60e-01 73.3% 31.6%
3917795 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.51 36.0 2.27e-01 75.0% 18.3%