Back to structures

NC_048757.1__YP_009844975.1__HWC13_gp145__00166

Bact-Vir

NC_048757.1__YP_009844975.1__HWC13_gp145__00166

Identity

Accession:
NC_048757 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.96e-01 88.2% 85.4%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.90e-01 72.1% 43.4%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.53 44.0 3.60e-01 98.5% 49.7%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.53 35.0 3.14e-01 70.6% 91.4%
2cclB00 1.10.1330.10 Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain 0.50 32.0 3.38e-01 88.2% 72.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4128017 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 39.0 3.16e-01 88.2% 33.3%
5081857 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 36.0 3.65e-01 85.3% 66.2%
3928585 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.56 38.0 2.68e-01 70.6% 59.1%
5034902 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.55 37.0 3.00e-01 70.6% 78.6%
3930255 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.53 38.0 3.03e-01 88.2% 34.6%
3713023 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.38e-01 95.6% 48.8%
4998452 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.52 44.0 3.30e-01 100.0% 36.2%
3257886 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 36.0 2.86e-01 88.2% 35.2%
4938073 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.51 41.0 2.89e-01 92.6% 48.3%