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NC_048759.1__YP_009845120.1__HWC15_gp026__00026
Bact-VirNC_048759.1__YP_009845120.1__HWC15_gp026__00026
Identity
- Accession:
- NC_048759 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
TaxID: 2557553
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 57.0 | 4.26e-01 | 100.0% | 40.1% |
| 2mheA00 | 3.30.70.2400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 | 0.61 | 52.0 | 4.91e-01 | 100.0% | 87.8% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 51.0 | 4.10e-01 | 100.0% | 71.3% |
| 4x83A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 3.73e-01 | 100.0% | 48.0% |
| 5tgfD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 41.0 | 2.61e-01 | 76.7% | 30.7% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 47.0 | 4.14e-01 | 90.0% | 86.5% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 39.0 | 2.33e-01 | 70.0% | 23.7% |
| 7bv5D01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 47.0 | 3.53e-01 | 100.0% | 63.8% |
| 1d3yB02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.54 | 37.0 | 2.59e-01 | 71.7% | 66.8% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 40.0 | 3.26e-01 | 85.0% | 41.3% |
| 3k85A00 | 3.30.230.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 43.0 | 2.79e-01 | 95.0% | 95.1% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 41.0 | 3.92e-01 | 98.3% | 73.7% |
| 1pc6A00 | 1.10.3790.10 | Mainly Alpha › Orthogonal Bundle › NinB fold › NinB | 0.51 | 41.0 | 3.13e-01 | 88.3% | 66.0% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 37.0 | 3.00e-01 | 81.7% | 74.0% |
| 2knrA00 | 3.40.1530.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) | 0.51 | 44.0 | 3.58e-01 | 100.0% | 53.4% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 38.0 | 3.24e-01 | 100.0% | 47.2% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 41.0 | 3.66e-01 | 100.0% | 62.5% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 41.0 | 3.54e-01 | 100.0% | 57.8% |
| 4uskA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 38.0 | 2.67e-01 | 81.7% | 65.4% |
| 1mt1B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.50 | 42.0 | 3.53e-01 | 100.0% | 62.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4093842 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.63 | 39.0 | 2.61e-01 | 100.0% | 15.5% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.61 | 46.0 | 3.89e-01 | 100.0% | 46.4% |
| 4944146 | 304.128.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB › FtsX | 0.60 | 52.0 | 4.58e-01 | 98.3% | 97.8% |
| 5041727 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 51.0 | 3.80e-01 | 100.0% | 66.3% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.59 | 41.0 | 3.41e-01 | 75.0% | 74.8% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.57 | 46.0 | 2.90e-01 | 95.0% | 15.8% |
| 4125527 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.56 | 45.0 | 3.67e-01 | 96.7% | 68.9% |
| 3190394 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 47.0 | 3.91e-01 | 100.0% | 55.3% |
| 3577596 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.55 | 45.0 | 3.54e-01 | 98.3% | 71.0% |
| 3614425 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.54 | 47.0 | 3.20e-01 | 100.0% | 34.8% |
| 4973990 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.54 | 46.0 | 2.96e-01 | 100.0% | 25.1% |
| 3610238 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.54 | 40.0 | 2.93e-01 | 88.3% | 88.5% |
| 3999372 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.53 | 40.0 | 3.17e-01 | 81.7% | 79.2% |
| 3959066 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 36.0 | 2.52e-01 | 73.3% | 98.3% |
| 3758281 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.53 | 39.0 | 2.88e-01 | 83.3% | 73.9% |
| 3176209 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 44.0 | 3.40e-01 | 100.0% | 58.0% |
| 3969324 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.52 | 38.0 | 2.75e-01 | 100.0% | 26.7% |
| 4099611 | 7510.1.1.3 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis | 0.52 | 44.0 | 3.27e-01 | 96.7% | 63.0% |
| 3393164 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.52 | 36.0 | 2.29e-01 | 76.7% | 73.7% |
| None | — | 0.52 | 43.0 | 2.69e-01 | 95.0% | 88.6% | |
| 3691249 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 41.0 | 3.31e-01 | 100.0% | 43.1% |
| 5052959 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 41.0 | 4.32e-01 | 100.0% | 98.2% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 43.0 | 3.51e-01 | 100.0% | 55.2% |
| 3393085 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.42e-01 | 75.0% | 68.0% |
| 4352825 | 1.10.1.1 ↗ | beta barrels › cradle loop barrel › HI0933 barrel domain-like › HI0933 barrel domain-like › HI0933_like_1st | 0.51 | 41.0 | 3.71e-01 | 100.0% | 63.3% |
| 3597298 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.51 | 38.0 | 2.80e-01 | 88.3% | 88.9% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.51 | 42.0 | 2.96e-01 | 95.0% | 36.6% |
| 3463187 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.51 | 39.0 | 2.49e-01 | 85.0% | 41.0% |
| 3950331 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.51 | 38.0 | 3.90e-01 | 95.0% | 88.3% |
| 5046867 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.50 | 40.0 | 3.07e-01 | 96.7% | 89.1% |
| 3779466 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.50 | 36.0 | 2.27e-01 | 100.0% | 12.2% |
| 3286547 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.50 | 39.0 | 2.87e-01 | 85.0% | 33.8% |