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NC_048760.1__YP_009845217.1__HWC16_gp020__00020
Bact-VirNC_048760.1__YP_009845217.1__HWC16_gp020__00020
Identity
- Accession:
- NC_048760 ↗
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Taxonomy
TaxID: 2565517
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-36
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.74 | 59.0 | 4.21e-01 | 100.0% | 28.3% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.74 | 59.0 | 5.03e-01 | 100.0% | 52.4% |
| 7obmA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.70 | 55.0 | 3.32e-01 | 100.0% | 25.0% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.70 | 48.0 | 4.18e-01 | 100.0% | 43.5% |
| 1kiaA01 | 3.30.46.10 | Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 | 0.64 | 50.0 | 4.02e-01 | 100.0% | 79.5% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.64 | 47.0 | 3.91e-01 | 100.0% | 42.5% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 47.0 | 4.65e-01 | 100.0% | 81.6% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 50.0 | 3.36e-01 | 100.0% | 29.6% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.62 | 45.0 | 4.21e-01 | 100.0% | 62.5% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.62 | 48.0 | 3.12e-01 | 100.0% | 17.8% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 43.0 | 4.37e-01 | 100.0% | 83.8% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.60 | 47.0 | 3.11e-01 | 100.0% | 40.9% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 42.0 | 3.10e-01 | 100.0% | 23.5% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 44.0 | 3.65e-01 | 100.0% | 54.3% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.59 | 45.0 | 2.71e-01 | 100.0% | 27.0% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 43.0 | 3.35e-01 | 100.0% | 36.5% |
| 4s21B02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 3.21e-01 | 97.1% | 27.7% |
| 6cnhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 41.0 | 3.40e-01 | 100.0% | 38.7% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.57 | 39.0 | 2.26e-01 | 76.5% | 6.6% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 39.0 | 2.70e-01 | 100.0% | 18.0% |
| 2jr1A01 | 3.30.160.510 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS | 0.55 | 39.0 | 3.58e-01 | 100.0% | 60.9% |
| 1egiA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.54 | 41.0 | 3.03e-01 | 97.1% | 40.3% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.53 | 41.0 | 3.60e-01 | 100.0% | 61.3% |
| 2kfpA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 36.0 | 2.70e-01 | 100.0% | 24.8% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 40.0 | 3.02e-01 | 100.0% | 56.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3575222 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.72 | 58.0 | 5.01e-01 | 100.0% | 56.7% |
| 3468853 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 5.38e-01 | 100.0% | 88.6% |
| 3719460 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.71 | 54.0 | 3.85e-01 | 100.0% | 32.3% |
| 3382561 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.71 | 55.0 | 3.50e-01 | 100.0% | 16.2% |
| 3301111 | 331.3.1.25 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO | 0.70 | 59.0 | 4.00e-01 | 100.0% | 31.1% |
| 3183690 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 54.0 | 3.69e-01 | 100.0% | 23.3% |
| 4256610 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.69 | 54.0 | 3.73e-01 | 100.0% | 24.1% |
| 4034091 | 4325.1.1.7 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 | 0.67 | 52.0 | 4.82e-01 | 100.0% | 66.0% |
| 3781935 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.67 | 53.0 | 3.74e-01 | 100.0% | 30.4% |
| 5074458 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.67 | 51.0 | 3.32e-01 | 97.1% | 18.2% |
| 3708697 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.67 | 55.0 | 3.54e-01 | 100.0% | 21.2% |
| 4943744 | 2487.1.1.24 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › EutA | 0.66 | 52.0 | 3.56e-01 | 97.1% | 100.0% |
| 2987895 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.65 | 49.0 | 4.94e-01 | 100.0% | 88.9% |
| 5079898 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 48.0 | 3.41e-01 | 94.1% | 68.5% |
| 2541776 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.63 | 51.0 | 3.68e-01 | 100.0% | 33.0% |
| 3340613 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 4.10e-01 | 100.0% | 52.5% |
| 3536085 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.62 | 47.0 | 4.19e-01 | 100.0% | 61.7% |
| 4025311 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.62 | 50.0 | 4.54e-01 | 100.0% | 64.0% |
| 5022899 | 896.1.1.8 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DUF1678 | 0.61 | 50.0 | 3.75e-01 | 100.0% | 40.4% |
| 5040059 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 3.37e-01 | 97.1% | 34.8% |
| 3257563 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.60 | 47.0 | 3.62e-01 | 100.0% | 42.1% |
| 3565594 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.60 | 44.0 | 2.56e-01 | 97.1% | 8.3% |
| 3240135 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 44.0 | 2.43e-01 | 97.1% | 5.0% |
| 2559786 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.59 | 44.0 | 4.20e-01 | 91.2% | 71.1% |
| 3487047 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.09e-01 | 100.0% | 65.0% |
| 165658 | 560.1.1.1 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › Histone_HNS | 0.55 | 39.0 | 3.38e-01 | 100.0% | 49.4% |
| 3987365 | 896.1.1.4 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 | 0.55 | 38.0 | 3.04e-01 | 70.6% | 30.0% |
| 3422764 | 4.1.1.313 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7912 | 0.52 | 42.0 | 3.82e-01 | 100.0% | 90.0% |
| 3423192 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.51 | 41.0 | 3.91e-01 | 100.0% | 79.1% |