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NC_048761.1__YP_009845418.1__HWC17_gp37__00037

Bact-Vir

NC_048761.1__YP_009845418.1__HWC17_gp37__00037

Identity

Accession:
NC_048761 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-113
PDB
D2 high residues 296-351
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 70.0 6.47e-01 100.0% 91.7%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.30e-01 100.0% 66.2%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 64.0 6.37e-01 100.0% 94.9%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 6.25e-01 100.0% 93.1%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 64.0 5.72e-01 100.0% 77.2%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 62.0 6.18e-01 100.0% 96.6%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.70 62.0 5.40e-01 100.0% 88.4%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 60.0 5.28e-01 100.0% 83.7%
2id0A02 2.40.50.640 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 61.0 5.56e-01 100.0% 90.4%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 60.0 5.53e-01 100.0% 86.3%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 59.0 4.27e-01 100.0% 62.7%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 58.0 5.63e-01 100.0% 92.2%
3cp0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.73e-01 100.0% 88.9%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 58.0 4.52e-01 100.0% 79.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 47.0 5.14e-01 78.6% 100.0%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 54.0 4.54e-01 100.0% 75.5%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 53.0 4.53e-01 100.0% 61.6%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 55.0 5.23e-01 100.0% 90.8%
3f8tA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 4.71e-01 100.0% 73.8%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 52.0 5.17e-01 100.0% 100.0%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.61 51.0 5.03e-01 100.0% 100.0%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 52.0 4.69e-01 98.2% 81.0%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.59 49.0 4.63e-01 100.0% 93.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.48e-01 100.0% 56.7%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 35.0 3.32e-01 100.0% 54.1%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.53 39.0 3.39e-01 85.7% 81.4%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.90e-01 100.0% 94.5%
3apaA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 42.0 3.27e-01 98.2% 84.1%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 39.0 3.09e-01 91.1% 45.9%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937684 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 6.36e-01 100.0% 91.7%
4944367 2.1.1.360 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA 0.74 65.0 5.82e-01 100.0% 81.2%
4399208 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.73 65.0 5.76e-01 100.0% 81.2%
5037218 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 63.0 5.40e-01 100.0% 60.0%
4599318 2.1.1.299 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.73 65.0 5.78e-01 100.0% 90.0%
3606816 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 65.0 5.21e-01 100.0% 66.4%
4332020 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.73 63.0 5.37e-01 100.0% 60.0%
4063004 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.73 63.0 4.68e-01 100.0% 38.6%
4111759 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.73 63.0 4.72e-01 100.0% 40.0%
4360803 3939.1.1.324 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Prot_ATP_ID_OB_N 0.73 63.0 4.73e-01 100.0% 40.0%
4627759 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.73 63.0 6.38e-01 100.0% 98.2%
4224482 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.72 63.0 5.67e-01 100.0% 81.2%
3970340 2.7.1.4 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 0.72 64.0 4.90e-01 100.0% 48.1%
3514981 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 5.09e-01 100.0% 50.0%
4254479 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 5.83e-01 100.0% 97.3%
4981994 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.72 64.0 5.71e-01 100.0% 78.8%
4103867 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.72 64.0 5.72e-01 100.0% 77.5%
4250117 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.72 63.0 5.66e-01 100.0% 76.2%
4011957 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 65.0 5.06e-01 100.0% 48.7%
4177859 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.71 61.0 5.85e-01 100.0% 83.1%
3594041 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 6.00e-01 100.0% 93.8%
4246562 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 5.29e-01 100.0% 70.5%
5083382 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.71 61.0 6.05e-01 100.0% 96.7%
4259370 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 6.03e-01 96.4% 98.2%
4161829 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 62.0 5.62e-01 100.0% 76.0%
4964073 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.70 60.0 4.76e-01 100.0% 72.5%
3603358 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 5.88e-01 100.0% 90.0%
4360971 2.1.1.293 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 0.70 60.0 5.75e-01 100.0% 96.9%
4992873 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 5.85e-01 98.2% 94.8%
3601844 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 4.94e-01 100.0% 50.9%
4994958 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 5.85e-01 98.2% 98.2%
4067858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.67e-01 100.0% 92.9%
4979052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 4.94e-01 94.6% 86.7%
3963655 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.69 60.0 5.75e-01 100.0% 86.2%
4965423 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 58.0 4.54e-01 96.4% 97.6%
4031803 2.4.1.10 beta barrels › OB-fold › MOP-like › MOP-like › TOBE,OB_MalK 0.69 55.0 4.22e-01 89.3% 40.8%
4989747 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 5.58e-01 96.4% 100.0%
4935682 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 55.0 5.60e-01 94.6% 94.5%
4997768 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 57.0 5.77e-01 98.2% 98.2%
3282486 2.1.1.262 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31148 0.68 60.0 5.87e-01 100.0% 98.3%
5002450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 55.0 5.60e-01 96.4% 96.4%
4968971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 5.64e-01 100.0% 96.4%
4965524 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 55.0 5.54e-01 96.4% 96.4%
4975151 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 54.0 5.52e-01 92.9% 98.2%
4930895 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.23e-01 100.0% 80.0%
4382135 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 53.0 4.31e-01 89.3% 47.3%
4218525 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.38e-01 96.4% 92.3%
4966535 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.55e-01 100.0% 91.7%
3935866 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 4.68e-01 100.0% 68.6%
4961575 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 53.0 4.11e-01 89.3% 42.4%
5043072 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.23e-01 100.0% 77.1%
4047622 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 52.0 4.22e-01 89.3% 46.4%
3235466 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.30e-01 100.0% 85.7%
3164388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 52.0 5.00e-01 89.3% 78.5%
5059843 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 4.60e-01 100.0% 72.4%
4390251 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.65 54.0 5.30e-01 96.4% 95.0%
3586203 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 5.08e-01 100.0% 81.5%
3840116 2.1.1.172 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNR_OB1_NT 0.64 55.0 4.54e-01 100.0% 56.2%
4159763 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 53.0 4.13e-01 100.0% 78.5%
5030261 2.1.1.363 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2101 0.63 53.0 5.17e-01 98.2% 96.9%
5064403 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 4.80e-01 96.4% 81.3%
4140237 2.1.1.88 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.62 53.0 4.61e-01 100.0% 72.2%
5061448 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.47e-01 96.4% 72.2%
3513289 2.1.1.63 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_2 0.62 52.0 5.01e-01 96.4% 84.6%
3608928 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.83e-01 96.4% 98.5%
3895347 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.26e-01 100.0% 57.0%
5035697 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.91e-01 100.0% 87.7%
3535276 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.59 49.0 4.12e-01 100.0% 69.1%
3294168 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.58 43.0 3.54e-01 82.1% 90.0%
4008023 2.1.1.332 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30333 0.53 43.0 3.81e-01 100.0% 69.5%
3706074 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.61e-01 94.6% 20.0%
4353811 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 44.0 4.12e-01 98.2% 81.4%
4946885 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.51 40.0 3.65e-01 98.2% 92.2%
5054848 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 40.0 3.44e-01 92.9% 70.0%
3203829 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.50 40.0 3.36e-01 100.0% 98.3%
D3 high residues 356-463
PDB
D4 high residues 471-582
PDB
D5 high residues 588-698
PDB