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NC_048764.1__YP_009845642.1__HWC20_gp62__00062

Bact-Vir

NC_048764.1__YP_009845642.1__HWC20_gp62__00062

Identity

Accession:
NC_048764 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Loughboroughvirus› Salmonella_phage_SE4

TaxID: 2575328

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-95
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 40.0 3.69e-01 76.7% 53.0%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.57 48.0 3.67e-01 100.0% 51.9%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.56 47.0 3.90e-01 100.0% 91.7%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.56 39.0 3.04e-01 78.3% 48.4%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.36e-01 91.7% 75.5%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 46.0 3.51e-01 96.7% 93.3%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 3.85e-01 98.3% 85.6%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.54 34.0 3.36e-01 76.7% 60.0%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 46.0 3.84e-01 100.0% 77.1%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 45.0 4.10e-01 98.3% 92.9%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.54e-01 85.0% 59.3%
7qh7701 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.52 39.0 2.84e-01 85.0% 64.1%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.45e-01 86.7% 67.3%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 42.0 3.43e-01 95.0% 76.0%
1cwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.74e-01 95.0% 93.5%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.66e-01 100.0% 73.1%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.74e-01 93.3% 70.3%
4hhrA01 1.10.640.10 Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type 0.50 35.0 2.10e-01 78.3% 30.2%
2pn5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.66e-01 95.0% 92.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032422 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.66 51.0 3.22e-01 85.0% 16.5%
3594168 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.63 54.0 3.87e-01 100.0% 55.8%
3982540 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.60 47.0 3.20e-01 86.7% 31.1%
4008870 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 47.0 2.88e-01 86.7% 18.7%
2720803 5.1.4.338 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.60 44.0 3.38e-01 88.3% 32.7%
5039983 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 47.0 4.62e-01 100.0% 83.1%
3700345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.17e-01 100.0% 90.0%
3531702 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 49.0 3.83e-01 100.0% 77.1%
3717155 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.73e-01 100.0% 58.6%
4024270 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 48.0 4.40e-01 96.7% 77.5%
3929989 330.16.1.2 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP 0.56 47.0 4.25e-01 96.7% 80.0%
3201221 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.56 47.0 3.99e-01 98.3% 71.4%
3169095 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.55 47.0 4.24e-01 98.3% 88.2%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.89e-01 100.0% 65.4%
3191607 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 43.0 2.63e-01 93.3% 55.1%
3741900 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.54 42.0 2.80e-01 86.7% 41.5%
5050503 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 44.0 2.66e-01 91.7% 55.3%
3457894 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.53 39.0 3.10e-01 76.7% 65.0%
3689454 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 3.81e-01 100.0% 82.7%
3743499 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 44.0 2.78e-01 95.0% 18.6%
3668385 243.1.1.89 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF7074 0.53 39.0 3.52e-01 83.3% 73.3%
3601659 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.44e-01 100.0% 42.7%
3587662 330.18.1.0 ↗ a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 0.53 41.0 3.63e-01 86.7% 84.4%
3578619 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 42.0 3.67e-01 95.0% 70.5%
3202278 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 42.0 3.21e-01 96.7% 48.2%
5076783 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 42.0 3.48e-01 86.7% 61.0%
3427427 243.3.1.47 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 0.52 39.0 3.50e-01 83.3% 71.1%
3457651 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.88e-01 98.3% 31.3%
3421079 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.52 45.0 2.96e-01 100.0% 39.6%
3593208 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.52 41.0 2.87e-01 90.0% 65.5%
3523220 395.1.1.1 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_C 0.52 35.0 3.78e-01 76.7% 86.0%
3692272 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.52 44.0 3.39e-01 98.3% 68.7%
4957565 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 35.0 2.85e-01 73.3% 80.8%
4931824 3509.1.1.1 ↗ a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain › RapA_C 0.51 38.0 2.73e-01 85.0% 39.3%
3441483 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.50 42.0 2.69e-01 100.0% 26.2%