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NC_048765.1__YP_009845761.1__HWC21_gp105__00105

Bact-Vir

NC_048765.1__YP_009845761.1__HWC21_gp105__00105

Identity

Accession:
NC_048765 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vapseptimavirus› Vibrio_phage_VAP7

TaxID: 2584487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-76
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.59e-01 100.0% 74.6%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 5.94e-01 100.0% 82.5%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.30e-01 100.0% 69.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.48e-01 100.0% 75.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.49e-01 100.0% 88.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.61e-01 100.0% 85.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 3.85e-01 100.0% 36.8%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 50.0 5.19e-01 100.0% 87.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 4.91e-01 100.0% 58.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.53e-01 100.0% 61.9%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.63 58.0 4.45e-01 100.0% 57.1%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 47.0 3.84e-01 82.5% 68.3%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 53.0 4.92e-01 100.0% 78.8%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 3.72e-01 76.2% 62.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.59 40.0 3.94e-01 93.7% 65.7%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 50.0 4.75e-01 100.0% 82.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.13e-01 100.0% 75.4%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 45.0 4.17e-01 100.0% 66.3%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.92e-01 98.4% 93.5%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 44.0 4.24e-01 100.0% 77.6%
2o1qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.21e-01 81.0% 95.3%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.53 41.0 3.41e-01 90.5% 87.6%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 45.0 4.16e-01 100.0% 79.5%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.30e-01 100.0% 39.6%
1vwxd00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.52 36.0 3.12e-01 74.6% 83.2%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.28e-01 77.8% 89.6%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 2.80e-01 90.5% 31.7%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.51 37.0 3.49e-01 96.8% 60.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 35.0 3.26e-01 73.0% 86.9%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.50 39.0 3.35e-01 92.1% 88.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.83 60.0 4.80e-01 100.0% 40.0%
3922903 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.82 57.0 5.90e-01 100.0% 76.7%
3421158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 53.0 5.49e-01 100.0% 73.3%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.67e-01 100.0% 76.7%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 4.70e-01 100.0% 51.8%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 50.0 5.31e-01 100.0% 77.8%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 54.0 4.93e-01 100.0% 57.8%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.75 51.0 3.00e-01 100.0% 9.7%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 4.74e-01 100.0% 58.7%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.74 51.0 4.86e-01 100.0% 61.3%
3407915 4.1.3.2 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › SHCBP_N 0.73 64.0 4.86e-01 100.0% 42.9%
3329059 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.73 49.0 5.33e-01 100.0% 88.0%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 51.0 4.97e-01 100.0% 68.6%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 53.0 4.89e-01 100.0% 62.5%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.71 59.0 5.30e-01 100.0% 67.1%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.70 49.0 5.21e-01 100.0% 83.6%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 47.0 4.98e-01 100.0% 81.8%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.70 47.0 4.46e-01 100.0% 58.7%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.12e-01 100.0% 70.7%
3940729 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 4.53e-01 100.0% 56.5%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.68 59.0 4.63e-01 100.0% 46.2%
3952480 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.67 44.0 5.08e-01 74.6% 95.6%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.52e-01 100.0% 64.0%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 56.0 5.62e-01 100.0% 89.2%
4532859 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.10e-01 100.0% 85.0%
3171521 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 44.0 4.78e-01 95.2% 88.0%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 51.0 4.70e-01 100.0% 66.3%
3833012 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.65 52.0 4.71e-01 100.0% 63.5%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 5.43e-01 100.0% 82.7%
3492018 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.44e-01 100.0% 53.3%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.65 45.0 4.64e-01 77.8% 76.7%
3612838 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 3.96e-01 71.4% 82.2%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.65 58.0 5.43e-01 100.0% 81.3%
3394559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.87e-01 100.0% 71.4%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 52.0 4.79e-01 100.0% 68.8%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.64 55.0 5.15e-01 100.0% 77.3%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.64 56.0 4.33e-01 100.0% 46.2%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.77e-01 100.0% 61.0%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.63 56.0 5.00e-01 100.0% 72.2%
3761319 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 50.0 4.98e-01 100.0% 84.6%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.73e-01 100.0% 83.1%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.13e-01 100.0% 90.6%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.69e-01 100.0% 66.7%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.14e-01 100.0% 52.9%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.71e-01 100.0% 69.4%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 40.0 4.33e-01 100.0% 86.0%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.20e-01 100.0% 55.2%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.56e-01 100.0% 69.4%
3698096 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.59 53.0 3.79e-01 100.0% 41.7%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.59 54.0 4.64e-01 100.0% 80.0%
5001481 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 48.0 4.58e-01 100.0% 80.0%
3591158 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 3.51e-01 84.1% 68.8%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 48.0 4.59e-01 100.0% 82.7%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.56 47.0 4.36e-01 100.0% 72.9%
4984268 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 40.0 3.60e-01 87.3% 88.0%
3722190 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.53 47.0 3.02e-01 100.0% 30.3%
3235213 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 47.0 3.71e-01 100.0% 80.0%
3504499 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.52 46.0 2.96e-01 100.0% 28.1%
3694746 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 41.0 2.54e-01 93.7% 67.4%
3991019 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 38.0 3.81e-01 98.4% 78.5%
3650660 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 40.0 3.21e-01 85.7% 90.3%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 44.0 3.60e-01 100.0% 69.6%
4492826 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 37.0 3.14e-01 79.4% 78.3%
3289804 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.51 35.0 2.63e-01 74.6% 63.9%