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NC_048765.1__YP_009845768.1__HWC21_gp112__00112

Bact-Vir

NC_048765.1__YP_009845768.1__HWC21_gp112__00112

Identity

Accession:
NC_048765 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vapseptimavirus› Vibrio_phage_VAP7

TaxID: 2584487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
D2 medium residues 62-144
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pyrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 46.0 3.57e-01 89.2% 37.6%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 53.0 4.93e-01 100.0% 93.4%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 45.0 4.31e-01 85.5% 71.3%
3c0fB00 3.30.1490.340 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 41.0 4.13e-01 75.9% 100.0%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 50.0 4.37e-01 100.0% 74.4%
1s2gB00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 3.23e-01 74.7% 68.3%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 50.0 3.36e-01 100.0% 53.2%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.56 50.0 3.97e-01 100.0% 81.1%
3g98A00 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.56 49.0 4.51e-01 98.8% 80.2%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 41.0 3.62e-01 81.9% 52.9%
1atzB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 48.0 3.80e-01 100.0% 56.6%
3agrA02 3.30.420.540 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 42.0 2.81e-01 83.1% 96.2%
3cq9A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.54 46.0 3.50e-01 95.2% 99.5%
3myuA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.54 36.0 3.02e-01 98.8% 38.9%
1ir6A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 47.0 4.04e-01 98.8% 63.6%
4uqfA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 42.0 3.62e-01 88.0% 88.8%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.52 38.0 3.34e-01 77.1% 70.3%
1aoxA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.52 45.0 3.49e-01 100.0% 43.3%
1shuX00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.52 45.0 3.57e-01 98.8% 49.2%
7xlqD02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 45.0 3.51e-01 100.0% 93.7%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.50 37.0 3.99e-01 97.6% 100.0%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.93e-01 100.0% 86.1%
2hy5B00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.50 43.0 3.76e-01 98.8% 92.4%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3182836 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 60.0 4.78e-01 100.0% 76.5%
3325644 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.67 51.0 4.83e-01 80.7% 83.0%
4017805 2007.1.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.67 43.0 3.04e-01 100.0% 22.0%
5077502 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.64 58.0 3.57e-01 100.0% 40.6%
4013103 2008.1.1.99 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.64 57.0 4.09e-01 98.8% 68.5%
3193527 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 56.0 4.24e-01 98.8% 62.5%
3636289 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 56.0 4.06e-01 98.8% 84.1%
3416893 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.62 54.0 3.94e-01 96.4% 45.2%
3601196 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.62 51.0 4.22e-01 92.8% 63.7%
3696059 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 38.0 2.88e-01 100.0% 25.0%
4036608 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.62 43.0 2.88e-01 96.4% 18.5%
3548841 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.62 54.0 3.72e-01 96.4% 50.2%
4042289 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.62 53.0 3.71e-01 94.0% 48.5%
5022884 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 51.0 4.59e-01 100.0% 65.2%
3195503 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 50.0 3.14e-01 91.6% 28.0%
4054105 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.61 44.0 4.51e-01 100.0% 80.0%
4379983 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.61 43.0 4.42e-01 100.0% 78.8%
3685990 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 52.0 4.11e-01 97.6% 52.2%
3197818 295.1.1.30 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Cyto_heme_lyase 0.60 39.0 3.11e-01 88.0% 33.7%
3728722 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 53.0 3.82e-01 100.0% 67.1%
3640675 2008.1.1.98 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pkinase_fungal 0.59 53.0 3.55e-01 100.0% 54.7%
3500885 3338.1.1.10 ↗ a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › Pep_M12B_propep 0.59 41.0 3.76e-01 89.2% 54.5%
3645055 880.1.1.4 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › PF30495 0.59 52.0 3.20e-01 97.6% 89.1%
5010296 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 49.0 3.93e-01 92.8% 95.9%
2557281 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.58 51.0 3.40e-01 100.0% 39.3%
3698170 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.57 47.0 3.07e-01 91.6% 49.9%
5004331 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.56 40.0 2.86e-01 75.9% 63.9%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 43.0 3.65e-01 83.1% 53.6%
4346433 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.55 44.0 3.88e-01 100.0% 56.9%
5082770 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.54 41.0 3.14e-01 79.5% 91.7%
3290605 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 38.0 3.41e-01 73.5% 73.0%
3930561 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.53 46.0 3.65e-01 100.0% 45.4%
3386748 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 41.0 3.42e-01 84.3% 95.3%
3264083 2006.1.6.41 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › vWA_SIBA-E 0.53 47.0 3.56e-01 100.0% 48.5%
4936965 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.53 46.0 2.96e-01 100.0% 43.5%
3638899 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.52 42.0 2.53e-01 86.7% 34.9%
3699939 2006.1.6.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.52 45.0 3.46e-01 98.8% 51.3%
3724346 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 3.05e-01 92.8% 93.3%
3897091 7516.1.1.17 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_6 0.52 43.0 3.02e-01 94.0% 68.2%
4937644 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.51 46.0 3.56e-01 100.0% 93.0%
4948801 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 45.0 3.30e-01 100.0% 35.4%
4338633 7516.1.1.17 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_6 0.51 44.0 3.12e-01 97.6% 82.1%
4952922 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.51 38.0 2.77e-01 79.5% 47.8%
3547198 7516.1.1.17 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_6 0.51 43.0 2.96e-01 97.6% 67.8%
4930169 304.103.1.5 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › TM1586_NiRdase 0.51 35.0 3.26e-01 72.3% 63.6%
3531324 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.51 42.0 2.39e-01 91.6% 12.8%
4982179 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 33.0 3.05e-01 100.0% 52.4%
4024225 230.1.1.2 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.51 42.0 3.25e-01 91.6% 64.7%
3470362 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.50 43.0 3.41e-01 98.8% 47.6%
4521363 7516.1.1.17 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_6 0.50 42.0 3.05e-01 97.6% 81.3%
3869472 2006.1.6.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.50 42.0 3.44e-01 98.8% 50.3%
3464177 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.50 43.0 3.83e-01 100.0% 83.9%