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NC_048765.1__YP_009845788.1__HWC21_gp132__00132
Bact-VirNC_048765.1__YP_009845788.1__HWC21_gp132__00132
Identity
- Accession:
- NC_048765 ↗
- Kingdom:
- phage
Quality
64.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Vapseptimavirus›
Vibrio_phage_VAP7
TaxID: 2584487
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-125
Domain cluster:
rep: NC_024788.1__YP_009055966.1__LD11_gp201__00201__D4-94
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04542.21 best | Sigma70_r2 | 37.1 | 3.10e-09 | 62.6% | 91.5% |
| PF00140.26 | Sigma70_r1_2 | 31.2 | 2.40e-07 | 21.9% | 67.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ldiF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 70.0 | 7.94e-01 | 93.5% | 100.0% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.88 | 84.0 | 7.10e-01 | 98.4% | 99.5% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.87 | 59.0 | 7.06e-01 | 73.2% | 98.8% |
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.86 | 68.0 | 4.77e-01 | 81.3% | 100.0% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.56 | 32.0 | 3.79e-01 | 82.1% | 80.5% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 46.0 | 4.52e-01 | 91.1% | 86.6% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 4.07e-01 | 86.2% | 91.5% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 37.0 | 3.09e-01 | 71.5% | 84.8% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 41.0 | 3.62e-01 | 86.2% | 71.0% |
| 1a5tA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 36.0 | 3.68e-01 | 85.4% | 75.0% |
| 3rrwB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.51 | 40.0 | 3.57e-01 | 84.6% | 89.6% |
| 3w0lD02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 43.0 | 3.24e-01 | 96.7% | 93.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4631806 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.96 | 83.0 | 6.82e-01 | 95.1% | 55.0% |
| 4513974 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.95 | 87.0 | 8.90e-01 | 100.0% | 96.7% |
| 4258677 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.92 | 74.0 | 5.80e-01 | 91.9% | 44.9% |
| None | — | 0.92 | 74.0 | 5.85e-01 | 91.9% | 45.9% | |
| 4233279 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.81 | 64.0 | 4.97e-01 | 81.3% | 59.2% |
| 4495452 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 55.0 | 5.83e-01 | 84.6% | 82.7% |
| 4557682 | 5063.1.1.21 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Transgly_assoc | 0.73 | 43.0 | 5.47e-01 | 87.8% | 97.3% |
| 4967612 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.63 | 50.0 | 4.36e-01 | 83.7% | 96.2% |
| 3410870 | 108.2.1.2 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › OBP47_like | 0.63 | 41.0 | 3.78e-01 | 85.4% | 49.1% |
| 3836118 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.63 | 33.0 | 3.53e-01 | 79.7% | 55.5% |
| 4164998 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.62 | 43.0 | 4.72e-01 | 92.7% | 89.0% |
| 5000701 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.59 | 39.0 | 3.41e-01 | 83.7% | 43.4% |
| 3611880 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.58 | 43.0 | 3.49e-01 | 77.2% | 89.8% |
| 3839022 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.58 | 46.0 | 3.91e-01 | 84.6% | 87.3% |
| 3942326 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.56 | 42.0 | 4.15e-01 | 82.9% | 73.3% |
| 3709410 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.56 | 39.0 | 3.21e-01 | 71.5% | 73.0% |
| 3874860 | 611.12.1.1 ↗ | alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO | 0.52 | 41.0 | 3.91e-01 | 95.1% | 70.7% |
| 5006457 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.51 | 46.0 | 3.80e-01 | 100.0% | 72.3% |
| 4637398 | 3684.1.1.10 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF677 | 0.51 | 42.0 | 3.23e-01 | 91.1% | 76.6% |
| 3529790 | 601.1.1.57 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_VBS2 | 0.50 | 41.0 | 4.08e-01 | 91.1% | 83.8% |
D2
high
residues 132-185
D3
high
residues 210-293
D4
high
residues 313-413