←Back to structures
NC_048765.1__YP_009845810.1__HWC21_gp154__00154
Bact-VirNC_048765.1__YP_009845810.1__HWC21_gp154__00154
Identity
- Accession:
- NC_048765 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Vapseptimavirus›
Vibrio_phage_VAP7
TaxID: 2584487
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-86
Domain cluster:
rep: NC_070967.1__YP_010671460.1__PQC17_gp330__00311__D3-97
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 52.0 | 4.28e-01 | 70.9% | 67.7% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.62 | 44.0 | 3.60e-01 | 74.7% | 43.2% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 49.0 | 4.25e-01 | 93.7% | 59.5% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.57 | 39.0 | 3.09e-01 | 70.9% | 87.2% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.52 | 37.0 | 2.70e-01 | 73.4% | 68.1% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 3.48e-01 | 74.7% | 72.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3398317 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.92 | 54.0 | 4.09e-01 | 70.9% | 29.4% |
| 3817420 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.90 | 53.0 | 3.92e-01 | 70.9% | 26.9% |
| 4929746 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.88 | 52.0 | 4.08e-01 | 88.6% | 31.5% |
| 3515407 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.87 | 51.0 | 3.90e-01 | 88.6% | 28.0% |
| 4942428 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.81 | 48.0 | 3.97e-01 | 73.4% | 34.8% |
| 4485921 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.78 | 54.0 | 4.60e-01 | 70.9% | 75.8% |
| 4564040 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.78 | 54.0 | 4.41e-01 | 70.9% | 67.4% |
| 3396714 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.77 | 54.0 | 4.27e-01 | 70.9% | 63.4% |
| 4953135 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.77 | 53.0 | 4.25e-01 | 70.9% | 62.1% |
| 4945806 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.76 | 46.0 | 4.00e-01 | 73.4% | 40.0% |
| 4160852 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.76 | 45.0 | 3.74e-01 | 73.4% | 34.1% |
| 3457354 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.74 | 51.0 | 4.09e-01 | 70.9% | 64.1% |
| 3220597 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.68 | 53.0 | 3.15e-01 | 83.5% | 38.8% |
| 3599620 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.67 | 57.0 | 4.97e-01 | 93.7% | 61.7% |
| 4283629 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 55.0 | 4.61e-01 | 93.7% | 57.7% |
| 4191334 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.62 | 51.0 | 4.22e-01 | 93.7% | 51.5% |
| 5026722 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.62 | 54.0 | 4.46e-01 | 93.7% | 55.6% |
| 3371570 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.61 | 53.0 | 4.19e-01 | 98.7% | 48.7% |
| 3172522 | 109.20.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C | 0.58 | 51.0 | 3.58e-01 | 94.9% | 66.9% |
| 4947471 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 44.0 | 3.09e-01 | 87.3% | 47.7% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.53 | 38.0 | 3.06e-01 | 74.7% | 40.6% |
| 5003581 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.53 | 46.0 | 2.91e-01 | 94.9% | 99.3% |
| 3579538 | 389.1.1.152 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_rec_like, EGF_3 | 0.52 | 36.0 | 3.02e-01 | 73.4% | 71.3% |
| 3363114 | 325.1.7.25 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PORR | 0.50 | 39.0 | 3.78e-01 | 84.8% | 81.1% |