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NC_048765.1__YP_009845814.1__HWC21_gp158__00158
Bact-VirNC_048765.1__YP_009845814.1__HWC21_gp158__00158
Identity
- Accession:
- NC_048765 ↗
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Vapseptimavirus›
Vibrio_phage_VAP7
TaxID: 2584487
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-182
Domain cluster:
rep: MW824370.1__QZI89717.1__MYOV002v2_p0012__00012__D17-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24199.2 best | DUF7424 | 113.2 | 2.10e-32 | 100.0% | 86.2% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f7kA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.69 | 39.0 | 4.62e-01 | 100.0% | 78.9% |
| 4f2eA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 35.0 | 4.36e-01 | 100.0% | 82.7% |
| 7wguB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.65 | 32.0 | 4.15e-01 | 97.5% | 82.4% |
| 2dv6A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.64 | 39.0 | 4.54e-01 | 100.0% | 85.0% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 36.0 | 4.65e-01 | 91.9% | 97.8% |
| 1z9lA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 36.0 | 4.05e-01 | 94.4% | 72.0% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 42.0 | 4.85e-01 | 98.1% | 98.3% |
| 1sppB00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.59 | 38.0 | 4.42e-01 | 98.1% | 91.1% |
| 2xu9A03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 39.0 | 4.32e-01 | 99.4% | 83.6% |
| 3kw8A02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 39.0 | 4.27e-01 | 100.0% | 81.2% |
| 7tg5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 37.0 | 4.47e-01 | 91.3% | 96.3% |
| 5lwxA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 39.0 | 4.07e-01 | 100.0% | 73.8% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.57 | 51.0 | 4.65e-01 | 99.4% | 88.6% |
| 3t9wA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 39.0 | 4.17e-01 | 100.0% | 83.5% |
| 3g5wA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 37.0 | 3.84e-01 | 100.0% | 71.6% |
| 3abzA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 48.0 | 4.83e-01 | 95.7% | 98.8% |
| 4knuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 42.0 | 4.30e-01 | 100.0% | 81.8% |
| 1a3zA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 36.0 | 3.73e-01 | 99.4% | 70.7% |
| 3kq4B02 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.54 | 32.0 | 3.62e-01 | 98.1% | 77.1% |
| 3zx1A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 37.0 | 3.77e-01 | 100.0% | 69.4% |
| 6syyA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 37.0 | 3.97e-01 | 100.0% | 81.2% |
| 3wodG00 | 2.30.30.1250 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 28.0 | 3.08e-01 | 92.5% | 61.4% |
| 2qqkA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.53 | 32.0 | 3.61e-01 | 98.1% | 78.6% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.53 | 36.0 | 4.16e-01 | 97.5% | 96.4% |
| 6evgA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 36.0 | 3.91e-01 | 99.4% | 82.6% |
| 2r7eA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 38.0 | 4.06e-01 | 100.0% | 86.1% |
| 3g5wA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 38.0 | 3.83e-01 | 99.4% | 74.2% |
| 6xizA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 36.0 | 3.66e-01 | 100.0% | 70.8% |
| 1zpuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 38.0 | 3.73e-01 | 100.0% | 71.7% |
| 2xsgB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 45.0 | 3.76e-01 | 98.1% | 69.5% |
| 4iykA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 30.0 | 3.39e-01 | 87.6% | 78.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4602942 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.72 | 36.0 | 4.75e-01 | 100.0% | 86.7% |
| 3393640 | 11.1.1.385 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASH | 0.68 | 41.0 | 4.69e-01 | 99.4% | 80.0% |
| 1243672 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.67 | 33.0 | 4.24e-01 | 99.4% | 80.2% |
| 5043725 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 46.0 | 5.10e-01 | 100.0% | 86.9% |
| 3517477 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.65 | 37.0 | 4.56e-01 | 92.5% | 85.7% |
| 4927251 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.63 | 35.0 | 4.33e-01 | 96.9% | 86.0% |
| 3916660 | 10.4.1.22 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_CDCP1_2 | 0.63 | 43.0 | 4.75e-01 | 100.0% | 86.2% |
| 5040473 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.60 | 35.0 | 4.25e-01 | 100.0% | 87.6% |
| 4926867 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.60 | 35.0 | 3.91e-01 | 100.0% | 72.1% |
| 3536478 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.60 | 41.0 | 4.77e-01 | 100.0% | 98.3% |
| 4938045 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 31.0 | 3.89e-01 | 95.0% | 81.0% |
| 3891591 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 41.0 | 4.61e-01 | 98.1% | 95.8% |
| 3842915 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 38.0 | 4.23e-01 | 100.0% | 83.1% |
| 3952668 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.57 | 38.0 | 4.03e-01 | 100.0% | 75.7% |
| 4878623 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.56 | 37.0 | 3.89e-01 | 100.0% | 73.8% |
| 3743348 | 11.1.1.470 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Psg1 | 0.55 | 29.0 | 3.35e-01 | 88.2% | 68.2% |
| 4119998 | 11.1.1.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha | 0.55 | 37.0 | 3.78e-01 | 93.8% | 69.0% |
| 3504143 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.55 | 38.0 | 3.85e-01 | 81.4% | 70.0% |
| 4860635 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.55 | 39.0 | 3.88e-01 | 100.0% | 70.3% |
| 3285389 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.55 | 37.0 | 3.61e-01 | 100.0% | 61.1% |
| 1169983 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.54 | 37.0 | 3.71e-01 | 100.0% | 66.5% |
| 3764403 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.54 | 38.0 | 4.15e-01 | 100.0% | 86.7% |
| 4403973 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.54 | 36.0 | 3.83e-01 | 100.0% | 75.9% |
| 4030017 | 837.1.1.0 ↗ | a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 | 0.54 | 27.0 | 3.58e-01 | 95.7% | 96.0% |
| 4960448 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 32.0 | 3.85e-01 | 95.7% | 95.0% |
| 3869023 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.53 | 47.0 | 4.28e-01 | 97.5% | 92.1% |
| 3934415 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 36.0 | 3.89e-01 | 96.9% | 82.2% |
| 3919374 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 35.0 | 3.89e-01 | 98.1% | 86.4% |
| 4026258 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.84e-01 | 94.4% | 98.9% |
| 4349096 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.51 | 38.0 | 3.96e-01 | 100.0% | 83.3% |
| 4408649 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.51 | 43.0 | 3.88e-01 | 91.3% | 93.8% |
| 4285426 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.51 | 39.0 | 3.89e-01 | 100.0% | 78.2% |
| 3497315 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 29.0 | 3.28e-01 | 95.0% | 73.3% |