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NC_048765.1__YP_009845837.1__HWC21_gp181__00181
Bact-VirNC_048765.1__YP_009845837.1__HWC21_gp181__00181
Identity
- Accession:
- NC_048765 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Vapseptimavirus›
Vibrio_phage_VAP7
TaxID: 2584487
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.69 | 40.0 | 4.48e-01 | 100.0% | 73.8% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.43e-01 | 100.0% | 62.3% |
| 1hekA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.55 | 39.0 | 3.46e-01 | 75.3% | 87.9% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.55 | 47.0 | 3.33e-01 | 100.0% | 54.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.39e-01 | 100.0% | 66.7% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 3.72e-01 | 100.0% | 74.6% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 47.0 | 4.33e-01 | 100.0% | 86.0% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.53 | 38.0 | 2.48e-01 | 75.3% | 90.2% |
| 2pvaA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 37.0 | 2.45e-01 | 75.3% | 90.0% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.58e-01 | 100.0% | 73.2% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.52 | 45.0 | 4.47e-01 | 100.0% | 98.8% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.83e-01 | 100.0% | 84.6% |
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 37.0 | 3.16e-01 | 77.9% | 80.1% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 30.0 | 3.19e-01 | 100.0% | 68.2% |
| 4x00A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 2.77e-01 | 88.3% | 43.2% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.50 | 43.0 | 3.30e-01 | 100.0% | 81.5% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.57e-01 | 100.0% | 77.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3536554 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.59 | 33.0 | 3.11e-01 | 75.3% | 45.3% |
| 3037102 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 33.0 | 3.66e-01 | 100.0% | 71.0% |
| 4485354 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 37.0 | 3.54e-01 | 100.0% | 55.3% |
| 3676844 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 35.0 | 3.55e-01 | 100.0% | 64.0% |
| 3533770 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.54 | 32.0 | 2.88e-01 | 100.0% | 42.9% |
| 5043037 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.54 | 46.0 | 4.32e-01 | 100.0% | 87.0% |
| 3737903 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.53 | 31.0 | 3.54e-01 | 100.0% | 81.8% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.53 | 35.0 | 3.68e-01 | 100.0% | 75.7% |
| 3740237 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.52 | 44.0 | 2.75e-01 | 100.0% | 95.9% |
| 3227009 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.52 | 35.0 | 3.60e-01 | 100.0% | 70.7% |
| 3850775 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.52 | 31.0 | 3.34e-01 | 100.0% | 69.2% |
| 4987003 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 35.0 | 3.78e-01 | 100.0% | 83.1% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 37.0 | 3.74e-01 | 100.0% | 74.4% |
| 3300051 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.51 | 33.0 | 3.36e-01 | 100.0% | 66.7% |