←Back to structures

NC_048767.1__YP_009845949.1__HWC23_gp15__00015

Bact-Vir

NC_048767.1__YP_009845949.1__HWC23_gp15__00015

Identity

Accession:
NC_048767 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dibbivirus› Pantoea_phage_vB_PagM_PSKM

TaxID: 2588094

Cluster

View cluster (57 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-153
PDB
Domain cluster: rep: IMGVR_UViG_3300048645_000386-3300048645-Ga0496646_0001782_1060_1725__D34-89_127-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23961.2 best Phage_tail_terminator_9 43.3 4.30e-11 100.0% 84.3%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.76 43.0 4.95e-01 77.0% 74.5%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 27.0 3.39e-01 100.0% 52.2%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.73 62.0 6.49e-01 96.4% 99.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 31.0 3.61e-01 95.7% 56.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.70 65.0 5.58e-01 100.0% 82.4%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.70 46.0 5.18e-01 96.4% 87.7%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 47.0 5.39e-01 97.1% 96.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.69 61.0 6.22e-01 100.0% 98.5%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 37.0 4.12e-01 77.7% 70.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 36.0 4.31e-01 79.9% 83.3%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 39.0 4.26e-01 79.9% 75.4%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 36.0 4.28e-01 80.6% 85.1%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.16e-01 89.9% 77.2%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.60 37.0 3.78e-01 84.2% 63.4%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 36.0 4.19e-01 83.5% 84.7%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 4.34e-01 89.2% 78.1%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.59 48.0 4.12e-01 91.4% 55.7%
1rm6A03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 33.0 3.43e-01 75.5% 58.3%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 50.0 4.89e-01 100.0% 99.4%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 42.0 4.16e-01 100.0% 74.3%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.81e-01 100.0% 69.9%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 3.82e-01 84.9% 83.5%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.85e-01 84.2% 84.2%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 28.0 2.97e-01 98.6% 54.0%
6y1zA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 47.0 4.13e-01 96.4% 80.2%
2fxtA00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.50e-01 100.0% 54.2%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 47.0 4.19e-01 96.4% 81.8%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 48.0 4.13e-01 96.4% 80.5%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 20.0 2.83e-01 77.7% 69.2%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 4.10e-01 89.2% 82.9%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 32.0 3.10e-01 77.7% 52.9%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.88e-01 85.6% 75.7%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.71e-01 96.4% 70.1%
1dpbA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 37.0 3.05e-01 72.7% 70.4%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 3.82e-01 100.0% 68.0%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 33.0 3.60e-01 98.6% 77.4%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 45.0 3.62e-01 95.7% 98.9%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.51 37.0 3.63e-01 93.5% 69.1%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 4.19e-01 78.4% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948250 304.124.1.9 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.88 84.0 8.05e-01 100.0% 96.8%
3970985 304.124.1.9 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.87 81.0 8.11e-01 97.8% 99.3%
3949263 304.124.1.9 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.87 64.0 7.40e-01 87.1% 100.0%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.76 71.0 6.03e-01 100.0% 93.0%
3966645 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.75 63.0 6.67e-01 95.0% 99.2%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.74 69.0 5.74e-01 100.0% 82.9%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.74 68.0 6.69e-01 100.0% 98.0%
4928893 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 65.0 6.48e-01 97.1% 97.9%
3802659 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.71 45.0 5.08e-01 83.5% 83.8%
364035 304.124.1.1 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.71 62.0 6.39e-01 97.1% 98.5%
3424042 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.65 44.0 4.16e-01 79.1% 58.7%
3606930 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.63 46.0 5.05e-01 96.4% 97.2%
3437564 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.61 43.0 4.07e-01 79.9% 61.2%
3462733 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.59 43.0 3.98e-01 78.4% 58.9%
3959045 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.59 42.0 4.53e-01 78.4% 85.8%
3289660 305.1.1.3 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 0.59 42.0 4.52e-01 78.4% 85.8%
3823986 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.04e-01 79.9% 63.0%
3495018 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.59 46.0 3.91e-01 91.4% 51.8%
3819973 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 42.0 3.98e-01 79.9% 63.0%
3284250 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.57 29.0 3.80e-01 73.4% 86.3%
3478389 825.1.1.2 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.56 49.0 3.87e-01 91.4% 94.3%
3949585 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 37.0 3.98e-01 95.7% 80.0%
2494924 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 24.0 3.05e-01 78.4% 66.7%
4419521 243.1.1.108 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ 0.55 39.0 4.02e-01 100.0% 75.6%
3274193 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 40.0 2.47e-01 100.0% 12.8%
3438809 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.68e-01 79.1% 63.5%
167355 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.52 39.0 3.88e-01 85.6% 75.7%
5034752 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.52 42.0 3.77e-01 100.0% 63.3%
4029699 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 36.0 3.68e-01 100.0% 75.2%