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NC_048767.1__YP_009846001.1__HWC23_gp67__00067
Bact-VirNC_048767.1__YP_009846001.1__HWC23_gp67__00067
Identity
- Accession:
- NC_048767 ↗
- Kingdom:
- phage
Quality
67.3
mean pLDDT
Taxonomy
TaxID: 2588094
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-48_66-87
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 47.0 | 3.79e-01 | 81.5% | 90.9% |
| 3e98B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 52.0 | 3.76e-01 | 90.8% | 73.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 46.0 | 4.07e-01 | 81.5% | 93.9% |
| 4obuA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.61 | 46.0 | 3.15e-01 | 81.5% | 42.3% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 44.0 | 4.13e-01 | 78.5% | 75.3% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 46.0 | 3.84e-01 | 86.2% | 79.8% |
| 1sqgA03 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.58 | 38.0 | 3.97e-01 | 86.2% | 74.1% |
| 3qthB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 48.0 | 3.68e-01 | 100.0% | 47.0% |
| 3nwnA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.55 | 48.0 | 3.13e-01 | 98.5% | 36.0% |
| 3ozoA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.55 | 42.0 | 3.10e-01 | 83.1% | 53.8% |
| 3mfqA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 40.0 | 3.16e-01 | 78.5% | 81.6% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.54 | 46.0 | 3.59e-01 | 100.0% | 84.7% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.29e-01 | 100.0% | 45.9% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.54 | 38.0 | 2.86e-01 | 73.8% | 79.4% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.54 | 41.0 | 3.33e-01 | 80.0% | 48.7% |
| 3oduB01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 40.0 | 2.69e-01 | 84.6% | 38.6% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 37.0 | 3.23e-01 | 100.0% | 46.2% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.52 | 44.0 | 3.84e-01 | 100.0% | 83.0% |
| 2pmbA01 | 3.30.1850.10 | Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like | 0.51 | 40.0 | 3.39e-01 | 84.6% | 95.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2453059 | 6051.5.1.1 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N | 0.62 | 43.0 | 4.36e-01 | 73.8% | 83.3% |
| 3537874 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.59 | 45.0 | 3.09e-01 | 81.5% | 98.6% |
| 4939058 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.57 | 47.0 | 3.24e-01 | 95.4% | 95.6% |
| 5042531 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.57 | 43.0 | 2.93e-01 | 81.5% | 57.9% |
| 414327 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.56 | 48.0 | 3.68e-01 | 100.0% | 47.0% |
| 4002410 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 41.0 | 3.21e-01 | 80.0% | 64.7% |
| 3587620 | 304.55.1.22 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL | 0.56 | 47.0 | 3.27e-01 | 92.3% | 100.0% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 46.0 | 3.92e-01 | 100.0% | 55.0% |
| 4514947 | 1032.1.1.0 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain | 0.55 | 50.0 | 2.71e-01 | 100.0% | 44.8% |
| 4014073 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 46.0 | 2.85e-01 | 100.0% | 33.0% |
| 2106287 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.55 | 41.0 | 3.62e-01 | 80.0% | 78.4% |
| 3269296 | 2006.1.6.22 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 | 0.55 | 48.0 | 3.42e-01 | 100.0% | 40.5% |
| 4022202 | 109.4.1.1588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 | 0.54 | 46.0 | 2.48e-01 | 100.0% | 4.7% |
| 4536162 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.54 | 40.0 | 3.84e-01 | 90.8% | 69.3% |
| 5012054 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.52 | 36.0 | 3.55e-01 | 72.3% | 91.4% |
| 4947879 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.52 | 36.0 | 3.61e-01 | 90.8% | 68.6% |
| 3814111 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.52 | 39.0 | 3.68e-01 | 81.5% | 86.3% |
| 3194849 | 7508.1.1.0 ↗ | a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain | 0.52 | 41.0 | 2.99e-01 | 98.5% | 29.0% |
| 4518512 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 37.0 | 3.87e-01 | 75.4% | 100.0% |
| 5062471 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 38.0 | 3.19e-01 | 100.0% | 46.4% |
| 5060154 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.51 | 36.0 | 3.52e-01 | 90.8% | 68.6% |
| 4032037 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 38.0 | 3.49e-01 | 81.5% | 78.9% |
| 4932335 | 101.1.9.20 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 | 0.51 | 36.0 | 3.60e-01 | 89.2% | 71.4% |
| 4994918 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.50 | 35.0 | 3.41e-01 | 84.6% | 64.0% |
| 5041711 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 35.0 | 3.43e-01 | 72.3% | 78.6% |