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NC_048770.1__YP_009846468.1__HWC26_gp131__00131

Bact-Vir

NC_048770.1__YP_009846468.1__HWC26_gp131__00131

Identity

Accession:
NC_048770 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_2L372X

TaxID: 2588515

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-108
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.65 44.0 4.16e-01 100.0% 57.8%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.60 20.0 2.61e-01 80.2% 48.4%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.60 36.0 4.33e-01 71.7% 95.5%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 36.0 4.37e-01 71.7% 100.0%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.59 26.0 2.79e-01 75.5% 46.8%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 27.0 2.67e-01 77.4% 37.5%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.57 42.0 4.04e-01 98.1% 68.1%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.56 39.0 3.28e-01 72.6% 43.5%
2etsA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.50 37.0 3.68e-01 94.3% 73.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3571500 109.4.1.1404 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_16 0.71 47.0 4.19e-01 99.1% 48.0%
3361553 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 41.0 4.58e-01 85.8% 74.1%
3703922 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 40.0 3.32e-01 97.2% 37.2%
4437443 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.64 46.0 4.84e-01 93.4% 83.2%
4592499 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.63 49.0 4.25e-01 89.6% 53.9%
3601886 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.62 43.0 4.27e-01 71.7% 82.7%
4220767 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.61 48.0 4.13e-01 89.6% 53.3%
4441542 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.60 47.0 4.12e-01 93.4% 55.6%
3362557 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.60 41.0 3.29e-01 70.8% 38.6%
3724776 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.59 47.0 4.31e-01 95.3% 64.3%
3677344 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.58 50.0 3.47e-01 97.2% 64.1%
3237156 604.12.1.4 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 0.56 46.0 4.28e-01 89.6% 74.8%
3607911 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 38.0 2.91e-01 97.2% 27.8%
3847053 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.56 38.0 4.36e-01 88.7% 100.0%
3789302 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 41.0 4.28e-01 99.1% 83.0%
3179429 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.89e-01 100.0% 82.5%
3170329 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.53 46.0 4.63e-01 93.4% 90.9%
4886336 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.53 43.0 3.72e-01 91.5% 55.3%
4154189 3281.1.1.2 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.53 46.0 2.88e-01 98.1% 71.7%
3734203 109.4.1.574 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p 0.52 38.0 2.79e-01 100.0% 28.7%
3765 601.26.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like › DUF1798 0.52 38.0 3.72e-01 94.3% 70.0%
3322796 109.4.1.1340 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_m, COG4_C, COG4_N 0.52 45.0 2.82e-01 100.0% 49.2%
3841651 109.4.1.908 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1 0.51 42.0 3.34e-01 93.4% 79.6%
3202306 4006.1.1.8 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Sas10_Utp3 0.50 40.0 3.82e-01 91.5% 73.3%