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NC_048771.1__YP_009846568.1__HWC27_gp020__00020

Bact-Vir

NC_048771.1__YP_009846568.1__HWC27_gp020__00020

Identity

Accession:
NC_048771 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.74 52.0 3.33e-01 72.9% 21.9%
1kgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.19e-01 83.1% 45.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 57.0 4.90e-01 100.0% 62.6%
3zq7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 3.88e-01 84.7% 42.6%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.66 50.0 4.62e-01 96.6% 63.3%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.66 49.0 4.37e-01 83.1% 60.7%
2wp8A00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.64 55.0 3.64e-01 100.0% 81.2%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 51.0 4.35e-01 89.8% 55.3%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 36.0 3.40e-01 100.0% 44.4%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 43.0 3.29e-01 72.9% 33.6%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 53.0 3.95e-01 100.0% 86.6%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 44.0 2.89e-01 78.0% 41.8%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 46.0 3.77e-01 81.4% 65.7%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.61 52.0 3.40e-01 98.3% 56.6%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 45.0 3.82e-01 81.4% 69.8%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.59 49.0 3.46e-01 94.9% 88.0%
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.58 47.0 3.74e-01 91.5% 69.0%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 41.0 3.13e-01 74.6% 34.4%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 43.0 3.76e-01 83.1% 55.4%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 43.0 3.83e-01 83.1% 59.0%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.37e-01 96.6% 86.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 3.21e-01 86.4% 38.0%
2cn3A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.90e-01 96.6% 84.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 39.0 3.43e-01 76.3% 70.3%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 44.0 2.85e-01 91.5% 31.7%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 2.69e-01 100.0% 21.0%
3q9vA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.86e-01 93.2% 74.5%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 46.0 3.60e-01 94.9% 46.4%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.54 43.0 3.55e-01 89.8% 70.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.31e-01 79.7% 83.3%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 2.87e-01 100.0% 97.1%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.26e-01 74.6% 67.5%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 41.0 3.78e-01 96.6% 67.1%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 47.0 2.74e-01 100.0% 80.5%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 38.0 3.34e-01 83.1% 53.2%
4blpB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 2.92e-01 100.0% 68.1%
3f8tA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.79e-01 91.5% 72.5%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 38.0 3.86e-01 91.5% 80.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 46.0 3.56e-01 100.0% 81.5%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.86e-01 93.2% 80.3%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 40.0 3.25e-01 88.1% 52.5%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 40.0 2.64e-01 94.9% 42.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3868838 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.70 48.0 3.49e-01 71.2% 49.4%
3326520 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.70 54.0 4.98e-01 88.1% 65.3%
3306543 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.70 54.0 5.11e-01 88.1% 70.0%
3618014 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.68 41.0 4.61e-01 94.9% 80.0%
3564821 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.68 46.0 3.44e-01 71.2% 51.0%
4021521 5.1.4.322 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT122_1st 0.68 50.0 2.80e-01 78.0% 52.9%
3234953 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.68 57.0 3.97e-01 98.3% 50.2%
3632467 5.1.4.266 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.68 49.0 2.75e-01 78.0% 48.5%
3763426 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.67 57.0 4.03e-01 98.3% 51.3%
2872975 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.67 55.0 4.07e-01 98.3% 52.8%
5004274 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 52.0 4.90e-01 89.8% 78.7%
4113536 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.66 55.0 4.12e-01 96.6% 52.5%
3263503 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.66 50.0 4.63e-01 83.1% 64.0%
135088 241.3.1.1 a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 0.66 51.0 4.52e-01 96.6% 58.1%
3281754 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.66 49.0 3.93e-01 79.7% 41.7%
6256 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 54.0 3.86e-01 100.0% 78.2%
4946203 3794.1.1.7 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › Biotin_lipoyl 0.65 44.0 4.10e-01 83.1% 54.7%
4243044 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.65 54.0 4.02e-01 98.3% 54.7%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.65 48.0 4.54e-01 88.1% 67.1%
3781848 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.65 49.0 4.68e-01 89.8% 70.0%
3899940 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.64 51.0 4.66e-01 88.1% 68.8%
4580534 241.3.1.1 a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 0.64 47.0 3.89e-01 79.7% 59.1%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.64 51.0 4.79e-01 89.8% 73.3%
3938492 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.64 39.0 4.40e-01 94.9% 82.2%
3453236 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.62 45.0 2.83e-01 89.8% 14.3%
3248668 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.62 51.0 4.73e-01 100.0% 71.2%
3685439 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.61 50.0 2.79e-01 94.9% 34.4%
3704287 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.60 46.0 4.51e-01 83.1% 83.1%
3229228 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.60 52.0 4.22e-01 98.3% 61.7%
5039149 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 48.0 4.16e-01 89.8% 73.7%
3619889 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.59 46.0 4.37e-01 88.1% 71.4%
3298646 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 2.77e-01 94.9% 43.4%
3403609 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.59 50.0 4.59e-01 94.9% 88.6%
3743751 5.1.4.400 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st, Beta-prop_VPS8 0.59 50.0 2.84e-01 96.6% 44.9%
4239781 3006.1.1.6 a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C 0.59 49.0 4.70e-01 94.9% 80.0%
3645247 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.58 45.0 4.11e-01 96.6% 62.4%
3490378 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.58 46.0 4.20e-01 88.1% 70.0%
3618016 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.58 40.0 4.43e-01 100.0% 95.6%
3603228 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 45.0 3.87e-01 86.4% 61.1%
3581513 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 46.0 4.21e-01 96.6% 67.5%
4012874 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 2.81e-01 100.0% 44.7%
3782707 5.1.4.274 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N, Beta-prop_IFT122_1st 0.56 50.0 2.82e-01 100.0% 42.9%
3167976 5.1.4.289 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.56 50.0 2.80e-01 100.0% 45.4%
3996720 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 42.0 4.06e-01 89.8% 70.0%
141372 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.56 40.0 3.47e-01 76.3% 70.3%
3457638 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.56 44.0 3.94e-01 98.3% 60.0%
1033396 243.4.1.1 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.55 43.0 4.05e-01 89.8% 100.0%
3469277 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.55 44.0 4.03e-01 100.0% 64.7%
3622446 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 43.0 4.11e-01 96.6% 72.9%
3739664 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.55 47.0 4.49e-01 96.6% 87.1%
3243117 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 43.0 3.76e-01 96.6% 54.0%
3911194 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 43.0 3.93e-01 94.9% 65.0%
5009392 5.1.3.127 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Tricorn_N 0.54 49.0 3.12e-01 100.0% 92.2%
3244220 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 46.0 3.19e-01 96.6% 49.5%
3386283 2008.1.1.100 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.54 41.0 2.86e-01 84.7% 65.3%
3880308 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 41.0 3.73e-01 83.1% 61.3%
3623430 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.54 45.0 3.30e-01 93.2% 56.2%
3999896 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 4.09e-01 86.4% 100.0%
3392739 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.53 48.0 2.86e-01 100.0% 94.4%
3821398 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 45.0 2.92e-01 100.0% 93.8%
3921414 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 41.0 3.79e-01 88.1% 64.6%
4046546 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.52 42.0 2.73e-01 91.5% 28.2%
3344918 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 38.0 2.45e-01 81.4% 23.3%
3589929 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.51 44.0 3.33e-01 100.0% 94.7%
4276145 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.50 40.0 3.40e-01 93.2% 91.7%