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NC_048771.1__YP_009846578.1__HWC27_gp030__00030

Bact-Vir

NC_048771.1__YP_009846578.1__HWC27_gp030__00030

Identity

Accession:
NC_048771 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_4L372D

TaxID: 2588518

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-51
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.69 49.0 3.65e-01 76.1% 67.5%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 44.0 3.44e-01 100.0% 30.1%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 53.0 5.09e-01 100.0% 91.4%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.62 52.0 4.07e-01 100.0% 91.7%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 51.0 3.74e-01 100.0% 48.6%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.58 50.0 3.67e-01 100.0% 92.4%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 47.0 3.32e-01 93.5% 71.4%
4ehiA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.57 47.0 3.36e-01 100.0% 27.6%
4mybA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 47.0 3.13e-01 97.8% 40.6%
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.57 43.0 3.37e-01 84.8% 82.2%
2zbiA02 3.30.70.2120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 49.0 3.78e-01 100.0% 71.6%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.56 43.0 3.43e-01 100.0% 36.8%
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 36.0 2.86e-01 91.3% 30.5%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 46.0 3.88e-01 100.0% 89.0%
1b7yB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.53 40.0 3.58e-01 89.1% 54.3%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.17e-01 100.0% 51.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.44e-01 100.0% 75.0%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 3.18e-01 100.0% 78.3%
5ddtA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 42.0 2.79e-01 97.8% 41.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3638180 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.74 46.0 5.13e-01 100.0% 82.9%
3290579 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.72 61.0 5.29e-01 100.0% 82.7%
4944482 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.72 44.0 4.93e-01 100.0% 82.9%
3572818 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.71 44.0 4.69e-01 100.0% 72.5%
3286726 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 43.0 4.84e-01 97.8% 80.0%
4033865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.68 58.0 4.15e-01 100.0% 46.9%
5015865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.68 58.0 4.22e-01 100.0% 33.6%
4967732 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.68 57.0 4.11e-01 100.0% 31.8%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.67 58.0 4.15e-01 100.0% 30.7%
5020151 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.67 58.0 4.23e-01 100.0% 34.8%
5049120 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.67 58.0 4.04e-01 100.0% 33.8%
5065878 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 56.0 4.03e-01 100.0% 36.2%
3945615 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 53.0 3.84e-01 97.8% 37.3%
4105434 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.65 56.0 3.99e-01 100.0% 30.5%
3753029 221.15.1.0 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.65 47.0 4.86e-01 80.4% 92.5%
1031012 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 51.0 3.69e-01 100.0% 45.6%
4956335 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.59e-01 100.0% 45.9%
None — 0.56 46.0 3.18e-01 100.0% 26.7%
1002416 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.56 42.0 3.11e-01 100.0% 26.4%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 38.0 3.16e-01 71.7% 100.0%
3952775 2492.1.1.35 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 0.55 41.0 2.94e-01 87.0% 53.5%
5030638 2492.1.1.16 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 0.54 40.0 3.11e-01 100.0% 31.9%
3959592 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 42.0 3.03e-01 93.5% 55.5%
3170947 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 3.73e-01 93.5% 100.0%
4976249 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 41.0 3.25e-01 97.8% 64.3%