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NC_048771.1__YP_009846723.1__HWC27_gp216__00175
Bact-VirNC_048771.1__YP_009846723.1__HWC27_gp216__00175
Identity
- Accession:
- NC_048771 ↗
- Kingdom:
- phage
Quality
78.3
mean pLDDT
Taxonomy
TaxID: 2588518
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.81 | 69.0 | 4.68e-01 | 93.4% | 36.9% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.75 | 67.0 | 5.30e-01 | 100.0% | 57.1% |
| 3ppuB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.75 | 58.0 | 4.65e-01 | 82.0% | 64.6% |
| 4qhpA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.72 | 63.0 | 3.92e-01 | 96.7% | 19.0% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.71 | 60.0 | 4.32e-01 | 98.4% | 92.9% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 60.0 | 5.32e-01 | 95.1% | 75.9% |
| 2r8qA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.70 | 61.0 | 3.84e-01 | 98.4% | 72.2% |
| 4g1tA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 56.0 | 3.69e-01 | 86.9% | 22.7% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.70 | 60.0 | 3.68e-01 | 95.1% | 58.2% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 61.0 | 4.93e-01 | 100.0% | 81.8% |
| 2olcA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.69 | 60.0 | 3.93e-01 | 100.0% | 66.4% |
| 7toiA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.68 | 60.0 | 4.09e-01 | 98.4% | 40.0% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.68 | 59.0 | 3.97e-01 | 95.1% | 63.5% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.67 | 54.0 | 4.90e-01 | 91.8% | 66.7% |
| 3b34A05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.66 | 56.0 | 3.59e-01 | 98.4% | 19.1% |
| 3d3yA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.66 | 54.0 | 3.80e-01 | 90.2% | 66.3% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 50.0 | 4.18e-01 | 85.2% | 63.4% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 55.0 | 4.47e-01 | 95.1% | 71.6% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.41e-01 | 91.8% | 78.1% |
| 2eabA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.64 | 50.0 | 2.95e-01 | 86.9% | 17.0% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 56.0 | 4.17e-01 | 95.1% | 70.9% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.63 | 54.0 | 3.66e-01 | 95.1% | 60.4% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.63 | 52.0 | 3.58e-01 | 93.4% | 53.1% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 56.0 | 5.50e-01 | 98.4% | 98.5% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 54.0 | 3.81e-01 | 100.0% | 63.6% |
| 1gwcA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 52.0 | 4.10e-01 | 100.0% | 85.1% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.61 | 49.0 | 4.18e-01 | 95.1% | 53.3% |
| 1bccB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 50.0 | 3.63e-01 | 95.1% | 67.0% |
| 2r7rA03 | 1.10.10.1990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain | 0.59 | 43.0 | 4.07e-01 | 95.1% | 64.5% |
| 2fgeA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 49.0 | 3.37e-01 | 98.4% | 55.6% |
| 7y8uF01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 48.0 | 3.47e-01 | 98.4% | 62.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689499 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.84 | 61.0 | 3.85e-01 | 77.0% | 16.8% |
| 4200061 | 604.12.1.78 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC | 0.83 | 68.0 | 5.07e-01 | 88.5% | 42.8% |
| 4399872 | 192.29.1.120 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FUSC | 0.83 | 68.0 | 4.98e-01 | 90.2% | 39.4% |
| 3218024 | 109.4.1.1651 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_EMC2 | 0.82 | 63.0 | 4.46e-01 | 82.0% | 33.7% |
| 3255948 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.82 | 73.0 | 5.81e-01 | 100.0% | 65.8% |
| 3737909 | 192.29.1.254 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Aip3p_Bud6_N | 0.80 | 71.0 | 5.52e-01 | 100.0% | 57.7% |
| 3572303 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.79 | 68.0 | 5.24e-01 | 93.4% | 63.1% |
| 4119527 | 604.5.1.33 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › FUSC | 0.78 | 68.0 | 5.07e-01 | 96.7% | 43.3% |
| 3986005 | 3236.1.1.22 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › FUSC | 0.78 | 68.0 | 5.05e-01 | 96.7% | 43.3% |
| 3943374 | 633.10.1.16 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › FUSC | 0.76 | 66.0 | 4.94e-01 | 96.7% | 43.3% |
| 4281883 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.76 | 55.0 | 4.14e-01 | 75.4% | 38.5% |
| 2576239 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.75 | 55.0 | 3.91e-01 | 78.7% | 28.7% |
| 4099493 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.74 | 64.0 | 5.58e-01 | 98.4% | 77.9% |
| 3563871 | 603.1.1.121 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 | 0.74 | 63.0 | 5.23e-01 | 100.0% | 76.5% |
| 3973013 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 64.0 | 3.98e-01 | 98.4% | 18.2% |
| 3606062 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 4.57e-01 | 88.5% | 76.9% |
| 3378446 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 50.0 | 3.16e-01 | 72.1% | 16.0% |
| 1031024 | 109.4.1.241 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C | 0.72 | 63.0 | 3.92e-01 | 96.7% | 19.0% |
| 3719269 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 5.13e-01 | 88.5% | 80.0% |
| 3953677 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.72 | 54.0 | 4.09e-01 | 78.7% | 48.1% |
| 3715109 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 54.0 | 3.48e-01 | 83.6% | 26.8% |
| 3705990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 61.0 | 5.65e-01 | 95.1% | 81.3% |
| 5008279 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.70 | 49.0 | 4.21e-01 | 73.8% | 85.3% |
| 4629067 | 633.24.1.5 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › PF29080 | 0.70 | 60.0 | 5.35e-01 | 95.1% | 74.1% |
| 3973398 | 604.1.1.250 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7902 | 0.70 | 55.0 | 4.95e-01 | 86.9% | 87.1% |
| 3736832 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 55.0 | 3.67e-01 | 85.2% | 48.1% |
| 5025209 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.69 | 60.0 | 3.96e-01 | 93.4% | 60.4% |
| 3977737 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.69 | 52.0 | 4.19e-01 | 80.3% | 57.4% |
| 3580283 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 53.0 | 4.81e-01 | 85.2% | 80.0% |
| 3975901 | 109.4.1.241 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C | 0.67 | 57.0 | 3.63e-01 | 98.4% | 19.1% |
| 5044378 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.67 | 54.0 | 4.10e-01 | 90.2% | 87.3% |
| 3688828 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.67 | 52.0 | 4.98e-01 | 83.6% | 100.0% |
| 1268387 | 604.1.1.6 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 | 0.67 | 52.0 | 4.34e-01 | 86.9% | 73.4% |
| 3480640 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.66 | 60.0 | 3.80e-01 | 100.0% | 74.1% |
| 3408346 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.66 | 57.0 | 5.29e-01 | 93.4% | 90.7% |
| 4477957 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.66 | 53.0 | 4.05e-01 | 86.9% | 40.7% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.65 | 48.0 | 4.79e-01 | 83.6% | 86.2% |
| 3166146 | 7110.1.1.1 ↗ | alpha arrays › Helical insertion of YcjX stress protein › Helical insertion of YcjX stress protein › Helical insertion of YcjX stress protein › DUF463 | 0.65 | 53.0 | 4.11e-01 | 90.2% | 63.0% |
| 5064973 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.64 | 58.0 | 5.52e-01 | 98.4% | 95.7% |
| 3275809 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.64 | 54.0 | 3.43e-01 | 100.0% | 44.1% |
| 3210227 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.61 | 54.0 | 3.46e-01 | 98.4% | 67.0% |