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NC_048771.1__YP_009846756.1__HWC27_gp183__00208

Bact-Vir

NC_048771.1__YP_009846756.1__HWC27_gp183__00208

Identity

Accession:
NC_048771 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_4L372D

TaxID: 2588518

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-83
PDB
Domain cluster: rep: MT161459.1__QIW86861.1__AHP1_301__00030__D33-83
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.68 57.0 4.81e-01 93.0% 57.9%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.67 50.0 4.01e-01 98.2% 39.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 51.0 3.59e-01 87.7% 53.5%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 38.0 3.71e-01 70.2% 52.3%
1y6jA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.63 54.0 3.91e-01 94.7% 37.3%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 38.0 3.59e-01 70.2% 48.6%
1n91A00 3.30.1200.10 Alpha Beta › 2-Layer Sandwich › Conserved Hypothetical Protein Mth637; Chain: A; › YggU-like 0.62 49.0 3.91e-01 100.0% 44.4%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 42.0 3.61e-01 100.0% 44.1%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.61 51.0 4.75e-01 96.5% 82.4%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 40.0 3.44e-01 71.9% 42.2%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 3.88e-01 96.5% 78.0%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 3.92e-01 100.0% 78.2%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 38.0 3.90e-01 70.2% 64.9%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 52.0 3.62e-01 100.0% 41.2%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 38.0 3.54e-01 70.2% 50.7%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.59 45.0 4.36e-01 96.5% 75.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 52.0 3.89e-01 100.0% 48.6%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 38.0 3.66e-01 70.2% 56.7%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 2.82e-01 71.9% 97.8%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 40.0 4.44e-01 86.0% 97.6%
4tt9B00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.59 43.0 3.97e-01 77.2% 94.4%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 37.0 3.48e-01 78.9% 50.0%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.17e-01 100.0% 93.6%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 49.0 4.46e-01 100.0% 72.8%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 49.0 3.81e-01 100.0% 58.6%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 3.02e-01 89.5% 34.2%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 45.0 3.64e-01 87.7% 71.7%
5xrwC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.57 41.0 3.68e-01 73.7% 84.6%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 45.0 4.39e-01 89.5% 98.4%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 3.88e-01 93.0% 60.4%
3oa5A01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 38.0 2.91e-01 70.2% 97.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 2.96e-01 94.7% 25.5%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 46.0 3.35e-01 100.0% 78.0%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.90e-01 80.7% 65.6%
5xrwA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.56 40.0 3.58e-01 73.7% 82.3%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 50.0 4.27e-01 100.0% 64.4%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 42.0 3.23e-01 87.7% 33.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 49.0 3.87e-01 100.0% 64.7%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 46.0 3.38e-01 100.0% 78.3%
3bs4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.12e-01 100.0% 87.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 44.0 3.90e-01 100.0% 90.1%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 41.0 2.61e-01 89.5% 87.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.42e-01 100.0% 87.5%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.44e-01 87.7% 58.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.81e-01 100.0% 87.8%
4upiA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 42.0 2.51e-01 100.0% 85.4%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 40.0 3.21e-01 100.0% 81.1%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 42.0 2.84e-01 94.7% 33.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335654 306.4.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.79 55.0 4.43e-01 71.9% 42.0%
3763290 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.75 53.0 4.02e-01 73.7% 49.2%
3847628 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 52.0 4.37e-01 73.7% 70.5%
5022814 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.72 60.0 5.56e-01 94.7% 84.0%
4456367 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.71 61.0 4.81e-01 100.0% 48.8%
3974974 241.13.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › SopD 0.71 52.0 4.13e-01 80.7% 40.8%
3929482 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.70 62.0 4.52e-01 100.0% 90.6%
3260311 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.70 54.0 3.10e-01 84.2% 18.9%
3664203 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.70 47.0 2.81e-01 84.2% 10.3%
3592067 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.69 61.0 4.28e-01 100.0% 33.3%
346984 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.68 58.0 3.77e-01 100.0% 23.8%
3298515 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.68 52.0 4.20e-01 100.0% 42.6%
1170594 885.1.1.1 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.68 57.0 4.81e-01 93.0% 57.9%
5077602 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.67 52.0 3.42e-01 87.7% 19.3%
4945596 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.67 44.0 4.87e-01 89.5% 86.7%
4984000 231.1.1.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 0.66 54.0 3.19e-01 96.5% 10.5%
5032518 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 49.0 4.18e-01 82.5% 73.7%
1684841 241.13.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › SopD 0.65 49.0 4.32e-01 82.5% 58.8%
3889588 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.65 52.0 3.74e-01 91.2% 45.1%
3881220 221.1.1.12 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.63 42.0 3.67e-01 70.2% 61.1%
3212138 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 43.0 3.92e-01 70.2% 74.7%
5028555 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.63 53.0 5.15e-01 96.5% 90.8%
3374580 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 55.0 3.81e-01 100.0% 37.5%
4937515 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.63 43.0 3.72e-01 71.9% 48.9%
3840475 304.9.1.104 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_2 0.63 57.0 4.84e-01 100.0% 70.0%
3927052 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.62 50.0 4.12e-01 94.7% 65.2%
1111918 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.62 53.0 4.00e-01 100.0% 77.6%
4883688 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.62 40.0 3.66e-01 71.9% 50.0%
3938847 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.61 44.0 2.61e-01 91.2% 9.9%
3629581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.61 43.0 2.75e-01 89.5% 15.1%
4995507 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.61 49.0 4.63e-01 96.5% 77.3%
4971706 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.60 53.0 3.77e-01 100.0% 55.7%
3715372 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.60 50.0 3.23e-01 100.0% 21.9%
3178364 319.1.1.19 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.60 46.0 3.79e-01 84.2% 62.9%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 46.0 4.53e-01 96.5% 78.5%
4030728 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.59 50.0 3.10e-01 100.0% 19.7%
4236664 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.58 45.0 3.32e-01 87.7% 64.8%
3643064 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 48.0 3.42e-01 100.0% 42.4%
3936775 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.58 48.0 3.56e-01 100.0% 49.4%
4569846 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.58 42.0 3.76e-01 77.2% 86.3%
3616581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.57 43.0 2.73e-01 98.2% 15.2%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.57 43.0 3.73e-01 80.7% 100.0%
3238722 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.57 42.0 2.72e-01 82.5% 84.7%
3497279 59.1.4.0 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 0.57 47.0 3.58e-01 100.0% 54.8%
4024943 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.56 43.0 2.87e-01 75.4% 32.7%
3297758 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.56 48.0 3.52e-01 96.5% 81.9%
5053333 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.26e-01 82.5% 88.1%
3838466 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.56 40.0 3.61e-01 75.4% 82.5%
1631501 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.56 37.0 2.42e-01 80.7% 13.5%
3352485 2007.5.1.17 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.56 44.0 2.91e-01 87.7% 89.8%
3722269 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 45.0 4.31e-01 98.2% 85.7%
3298595 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 42.0 3.22e-01 89.5% 50.3%
3209385 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 45.0 4.35e-01 98.2% 92.3%
3510754 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 41.0 3.52e-01 100.0% 50.5%
3476821 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 44.0 2.90e-01 100.0% 41.3%
3966739 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.53 38.0 3.88e-01 77.2% 83.6%
4001520 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.52 39.0 2.68e-01 96.5% 20.9%
3509919 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.52 41.0 2.72e-01 100.0% 19.6%
3351647 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 42.0 3.52e-01 100.0% 94.2%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 41.0 3.60e-01 89.5% 83.3%
4946324 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 43.0 2.97e-01 98.2% 62.7%
4040812 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 38.0 3.40e-01 84.2% 82.0%
4339487 304.55.2.7 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.51 42.0 2.93e-01 100.0% 65.8%
3280383 327.16.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › YflT 0.50 41.0 3.95e-01 94.7% 86.8%