←Back to structures
NC_048771.1__YP_009846766.1__HWC27_gp173__00218
Bact-VirNC_048771.1__YP_009846766.1__HWC27_gp173__00218
Identity
- Accession:
- NC_048771 ↗
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Taxonomy
TaxID: 2588518
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-57
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mpoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.69 | 48.0 | 3.92e-01 | 75.5% | 99.1% |
| 3qwuA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 45.0 | 4.69e-01 | 98.1% | 95.7% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 40.0 | 2.52e-01 | 75.5% | 32.7% |
| 8dc1A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 47.0 | 3.16e-01 | 100.0% | 27.7% |
| 3nhqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 38.0 | 3.06e-01 | 77.4% | 41.2% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 42.0 | 2.96e-01 | 100.0% | 73.6% |
| 7pluA01 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.50e-01 | 100.0% | 97.3% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.53 | 37.0 | 3.18e-01 | 100.0% | 44.1% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 37.0 | 3.20e-01 | 77.4% | 73.6% |
| 1o70A02 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.52 | 41.0 | 3.17e-01 | 100.0% | 67.9% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.51 | 36.0 | 2.34e-01 | 81.1% | 29.3% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.51 | 38.0 | 2.47e-01 | 84.9% | 39.8% |
| 4byfC02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.10e-01 | 100.0% | 71.4% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 44.0 | 3.74e-01 | 100.0% | 77.5% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 35.0 | 3.01e-01 | 73.6% | 52.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995927 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.67 | 47.0 | 4.03e-01 | 75.5% | 90.0% |
| 4932308 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.63 | 41.0 | 4.76e-01 | 84.9% | 100.0% |
| 3919771 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.62 | 42.0 | 4.33e-01 | 71.7% | 90.0% |
| 3482645 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.62 | 37.0 | 4.24e-01 | 92.5% | 91.4% |
| 3587325 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.61 | 34.0 | 3.92e-01 | 90.6% | 81.8% |
| 4101939 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.61 | 42.0 | 2.64e-01 | 73.6% | 86.8% |
| 3196528 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.61 | 44.0 | 4.30e-01 | 81.1% | 83.3% |
| 3503283 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 41.0 | 4.39e-01 | 73.6% | 93.3% |
| 3495969 | 919.1.1.0 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 | 0.59 | 39.0 | 4.25e-01 | 90.6% | 83.7% |
| 5031337 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.59 | 39.0 | 4.28e-01 | 84.9% | 92.3% |
| 4963832 | 5069.1.1.107 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Exosortase_EpsH | 0.58 | 40.0 | 2.64e-01 | 75.5% | 40.4% |
| 4189465 | 919.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 | 0.58 | 38.0 | 4.29e-01 | 94.3% | 100.0% |
| 3932680 | 919.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 | 0.58 | 39.0 | 4.07e-01 | 92.5% | 74.0% |
| 4964214 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.57 | 39.0 | 3.90e-01 | 88.7% | 69.1% |
| 5084051 | 375.8.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › TRAM | 0.57 | 37.0 | 4.18e-01 | 83.0% | 100.0% |
| 3273040 | 919.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 | 0.57 | 38.0 | 4.21e-01 | 98.1% | 95.0% |
| 3470536 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.56 | 45.0 | 3.58e-01 | 100.0% | 52.6% |
| 4369866 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.56 | 39.0 | 4.30e-01 | 96.2% | 97.5% |
| 3612107 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.56 | 38.0 | 3.70e-01 | 88.7% | 63.3% |
| 4854353 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.55 | 35.0 | 3.54e-01 | 98.1% | 64.2% |
| 5048636 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.54 | 38.0 | 4.17e-01 | 77.4% | 97.5% |
| 5045533 | 205.1.1.22 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 | 0.54 | 39.0 | 3.38e-01 | 81.1% | 49.5% |
| 5071213 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 42.0 | 3.80e-01 | 100.0% | 61.3% |
| 3503021 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.54 | 35.0 | 3.91e-01 | 83.0% | 100.0% |
| 4438701 | 375.1.1.272 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 | 0.54 | 36.0 | 3.74e-01 | 90.6% | 77.6% |
| 4239781 | 3006.1.1.6 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C | 0.53 | 37.0 | 3.54e-01 | 79.2% | 64.3% |
| 4926933 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.43e-01 | 75.5% | 93.2% |
| 4385340 | 5.1.3.160 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 | 0.52 | 35.0 | 2.28e-01 | 71.7% | 31.5% |
| 4276264 | 375.8.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 | 0.52 | 34.0 | 3.58e-01 | 86.8% | 80.0% |
| 3721151 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.52 | 39.0 | 2.42e-01 | 84.9% | 34.7% |
| 4049910 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.52 | 36.0 | 3.78e-01 | 96.2% | 84.4% |
| 3717104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.10e-01 | 100.0% | 48.6% |
| 3616471 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 37.0 | 2.43e-01 | 84.9% | 48.1% |
| 5036974 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.03e-01 | 79.2% | 45.2% |
| 4928263 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.04e-01 | 77.4% | 44.5% |
| 3285499 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 38.0 | 3.76e-01 | 90.6% | 80.0% |
| 3336598 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 40.0 | 2.72e-01 | 100.0% | 53.2% |
| 1199657 | 9002.1.1.1 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 | 0.50 | 35.0 | 3.53e-01 | 79.2% | 76.8% |