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NC_048772.1__YP_009846802.1__HWC28_gp003__00003

Bact-Vir

NC_048772.1__YP_009846802.1__HWC28_gp003__00003

Identity

Accession:
NC_048772 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_4L372XY

TaxID: 2588520

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: rep: OP714164.2__UZS00905.1__X__00097__D2-56
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.68 58.0 5.09e-01 100.0% 100.0%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.66 56.0 4.22e-01 100.0% 41.7%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.65 55.0 4.80e-01 100.0% 97.6%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.65 55.0 4.86e-01 100.0% 100.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.64 55.0 5.19e-01 100.0% 85.7%
2byfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 54.0 4.30e-01 100.0% 48.6%
2h6uA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.62 53.0 4.19e-01 100.0% 45.6%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 50.0 4.23e-01 100.0% 84.7%
3qvaA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.60 46.0 3.71e-01 100.0% 41.3%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.60 50.0 4.12e-01 98.1% 52.0%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.97e-01 100.0% 50.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.59 51.0 4.42e-01 100.0% 95.2%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.63e-01 100.0% 34.1%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 3.56e-01 100.0% 49.7%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 48.0 3.80e-01 100.0% 55.3%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 49.0 3.88e-01 100.0% 50.4%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.04e-01 100.0% 52.0%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.58 49.0 4.28e-01 98.1% 73.2%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.58 49.0 3.57e-01 100.0% 38.5%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 3.99e-01 100.0% 100.0%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.84e-01 96.2% 64.5%
6w5yC01 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.57 48.0 3.58e-01 100.0% 67.4%
2aqjA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 2.69e-01 100.0% 16.2%
2qg3A00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.56 46.0 3.23e-01 100.0% 26.3%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 4.11e-01 100.0% 84.1%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.91e-01 100.0% 100.0%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.90e-01 100.0% 76.8%
5lq1B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 44.0 3.70e-01 100.0% 100.0%
1tljB00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.55 46.0 3.22e-01 100.0% 27.7%
1c0aA03 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.55 40.0 3.04e-01 84.6% 55.3%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.53e-01 100.0% 46.4%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.06e-01 100.0% 41.5%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 42.0 4.05e-01 98.1% 88.5%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.95e-01 98.1% 98.5%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.51 43.0 3.38e-01 100.0% 69.2%
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 42.0 3.64e-01 100.0% 63.7%
3m3iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.02e-01 98.1% 63.4%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.07e-01 98.1% 46.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550506 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.63 54.0 4.42e-01 100.0% 51.0%
3392914 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.63 50.0 4.27e-01 100.0% 52.2%
3175440 3519.1.1.1 ↗ beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.63 54.0 4.31e-01 100.0% 89.1%
3500941 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.62 55.0 4.12e-01 100.0% 40.8%
5022099 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.27e-01 100.0% 53.6%
3249099 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 52.0 3.95e-01 100.0% 39.2%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.61 52.0 4.87e-01 98.1% 81.5%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 47.0 4.82e-01 94.2% 100.0%
5029381 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.60 50.0 3.50e-01 100.0% 38.4%
3338287 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.60 45.0 4.27e-01 98.1% 69.2%
5024296 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.59 49.0 3.44e-01 100.0% 79.3%
4982909 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.59 49.0 3.44e-01 100.0% 28.0%
5043482 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.59 48.0 3.41e-01 100.0% 27.9%
4955086 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.58 47.0 3.28e-01 100.0% 26.5%
5033521 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.57 48.0 3.39e-01 100.0% 28.1%
3426937 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 2.67e-01 100.0% 9.2%
4322969 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.57 48.0 3.33e-01 100.0% 26.7%
4979117 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 47.0 4.08e-01 100.0% 85.6%
3932964 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 48.0 3.20e-01 100.0% 28.1%
4414821 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 47.0 3.97e-01 98.1% 76.6%
5008578 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.56 47.0 4.06e-01 100.0% 75.6%
3236583 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 46.0 3.58e-01 100.0% 57.7%
4061211 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.56 38.0 2.45e-01 73.1% 74.6%
3513859 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.29e-01 94.2% 100.0%
1759138 207.1.1.35 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8,Island 0.55 44.0 2.68e-01 100.0% 12.0%
3500046 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.72e-01 100.0% 60.5%
5082586 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.63e-01 100.0% 55.0%
4983464 11.9.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › DUF2848 0.55 45.0 3.09e-01 100.0% 32.0%
3211095 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.55 47.0 3.34e-01 100.0% 32.4%
4316258 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.54 43.0 3.83e-01 96.2% 84.7%
274267 10.2.1.87 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P3_C 0.54 44.0 3.31e-01 100.0% 43.0%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.54 43.0 3.58e-01 100.0% 62.7%
3783236 3519.1.1.1 ↗ beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.54 43.0 3.41e-01 100.0% 91.5%
4411249 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.53 43.0 3.07e-01 96.2% 81.1%
5011747 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.53 44.0 3.79e-01 100.0% 78.9%
4021702 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 44.0 2.87e-01 100.0% 20.4%
3206074 221.1.1.179 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ams2-SPT21_N 0.52 43.0 3.27e-01 100.0% 52.4%
4620685 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.52 43.0 3.08e-01 98.1% 78.9%
4031728 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 43.0 3.28e-01 98.1% 54.1%
4024013 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.52 40.0 2.71e-01 100.0% 20.4%
4962738 2003.6.1.13 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Khk 0.51 40.0 2.45e-01 88.5% 93.2%