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NC_048772.1__YP_009846924.1__HWC28_gp125__00125

Bact-Vir

NC_048772.1__YP_009846924.1__HWC28_gp125__00125

Identity

Accession:
NC_048772 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-154
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18143.7 best HAD_SAK_2 58.1 1.80e-15 94.0% 97.8%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cgxA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.70 54.0 4.64e-01 100.0% 52.6%
3shqA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 62.0 5.43e-01 100.0% 70.4%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 57.0 5.90e-01 99.3% 99.3%
3qleA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 57.0 5.41e-01 100.0% 76.9%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 61.0 5.98e-01 100.0% 95.0%
3e8mA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 60.0 5.87e-01 100.0% 90.2%
3e58B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 58.0 5.91e-01 98.0% 97.3%
3qnmA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 56.0 5.82e-01 98.7% 97.9%
2ah5A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 57.0 5.85e-01 98.7% 97.9%
3mc1A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 59.0 5.95e-01 99.3% 98.0%
3ewiB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 59.0 5.82e-01 100.0% 93.0%
2ymmB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 59.0 5.93e-01 100.0% 96.1%
1te2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 57.0 5.85e-01 99.3% 97.9%
3kbbA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 56.0 5.78e-01 100.0% 100.0%
5d84A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 36.0 4.09e-01 87.4% 74.8%
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 56.0 5.22e-01 100.0% 94.3%
7u35A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 38.0 4.60e-01 94.0% 100.0%
1dk7A00 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.61 40.0 4.07e-01 100.0% 67.8%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 46.0 4.81e-01 94.7% 87.0%
2b78A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 47.0 4.22e-01 82.1% 99.5%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.58 53.0 4.62e-01 100.0% 93.8%
2g07A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 52.0 4.88e-01 100.0% 80.2%
4qq8A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.57 43.0 4.11e-01 79.5% 79.1%
3oidC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 52.0 4.41e-01 99.3% 91.9%
1h5qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 52.0 4.34e-01 99.3% 89.6%
2qi2A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.57 40.0 4.49e-01 74.2% 95.6%
5ze7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 45.0 4.55e-01 100.0% 83.9%
4yhbA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 43.0 4.56e-01 90.7% 91.7%
1y42X01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 48.0 3.92e-01 90.7% 78.7%
2vk2A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 4.39e-01 100.0% 87.8%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 50.0 4.44e-01 100.0% 99.6%
4nesA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 47.0 4.59e-01 100.0% 84.7%
3v8bC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 50.0 4.22e-01 99.3% 92.9%
1yb1B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 50.0 4.32e-01 99.3% 91.5%
3jy6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 40.0 4.28e-01 100.0% 88.4%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 39.0 3.35e-01 72.8% 94.3%
2z5lA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 50.0 3.52e-01 99.3% 46.8%
4ecmA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 47.0 4.04e-01 94.0% 94.7%
3c85A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 43.0 4.37e-01 95.4% 84.0%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.54 49.0 4.90e-01 100.0% 98.0%
1jcfA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 32.0 4.02e-01 92.1% 98.9%
7d73E01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 49.0 4.34e-01 99.3% 81.1%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.67e-01 94.0% 49.0%
3hcwA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 42.0 4.35e-01 100.0% 91.4%
5ijgA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 43.0 3.85e-01 87.4% 81.2%
2panA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.52 44.0 4.33e-01 100.0% 82.6%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 46.0 4.42e-01 95.4% 87.9%
1orrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 3.64e-01 99.3% 75.5%
1id1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 4.62e-01 96.7% 94.8%
7fg9A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 43.0 4.21e-01 100.0% 84.0%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 3.39e-01 85.4% 95.4%
3axbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 46.0 3.93e-01 99.3% 86.7%
2gb3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 42.0 3.66e-01 88.7% 88.9%
3e0xA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 47.0 3.95e-01 100.0% 93.1%
2zjgA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 41.0 3.50e-01 88.7% 75.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3613437 2006.1.1.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 0.81 73.0 7.21e-01 100.0% 88.1%
3584528 2006.1.1.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 0.79 76.0 7.23e-01 100.0% 89.4%
3304622 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.70 65.0 5.61e-01 100.0% 76.5%
2600322 7516.1.1.23 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 0.70 54.0 4.64e-01 100.0% 52.4%
3592299 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 64.0 5.64e-01 100.0% 73.0%
3594861 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 64.0 6.03e-01 100.0% 86.7%
3711640 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.69 59.0 5.43e-01 100.0% 72.6%
3607482 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.68 63.0 5.42e-01 100.0% 66.8%
3399835 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.68 63.0 5.71e-01 100.0% 82.3%
3611193 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.68 59.0 5.08e-01 100.0% 60.4%
3927755 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.67 62.0 5.50e-01 100.0% 72.6%
4085028 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.67 62.0 5.49e-01 100.0% 99.1%
3739429 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.67 58.0 5.30e-01 100.0% 70.5%
5058511 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.67 62.0 5.51e-01 99.3% 98.6%
135830 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.67 62.0 5.95e-01 100.0% 90.0%
3472056 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.66 61.0 5.88e-01 100.0% 91.1%
4945170 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 59.0 5.30e-01 100.0% 98.1%
3896439 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.65 60.0 5.69e-01 100.0% 86.9%
9875 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.64 59.0 5.22e-01 98.7% 98.1%
4994844 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.63 58.0 5.07e-01 100.0% 95.9%
3599254 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.62 58.0 5.28e-01 100.0% 78.9%
5039292 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.62 42.0 3.31e-01 100.0% 32.9%
3289068 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.62 55.0 5.37e-01 96.0% 90.9%
4944109 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 46.0 5.04e-01 92.1% 96.8%
3966875 7577.1.1.3 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.59 48.0 3.70e-01 86.1% 65.1%
4452325 7516.1.1.5 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD 0.58 50.0 4.35e-01 92.7% 97.4%
4039685 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.58 35.0 3.87e-01 91.4% 74.2%
4014531 2003.1.1.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.57 53.0 4.29e-01 99.3% 89.5%
4966938 2003.1.4.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › CO_dh 0.57 51.0 4.85e-01 100.0% 80.6%
3881570 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.57 51.0 4.24e-01 98.7% 99.6%
3944848 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.57 52.0 4.34e-01 99.3% 92.7%
9064 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.57 52.0 4.34e-01 99.3% 89.6%
5077065 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 48.0 3.87e-01 91.4% 72.3%
4890580 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.56 47.0 4.42e-01 100.0% 74.6%
3692919 2003.1.1.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 51.0 4.04e-01 99.3% 86.7%
4558910 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.56 50.0 4.50e-01 98.0% 79.5%
5049554 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.56 49.0 4.73e-01 98.0% 83.4%
3607486 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.55 49.0 4.27e-01 97.4% 84.3%
5080107 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 42.0 4.46e-01 100.0% 91.5%
None 0.55 47.0 4.20e-01 93.4% 97.3%
5028246 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 46.0 4.29e-01 100.0% 71.6%
4978139 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.54 47.0 3.78e-01 94.7% 92.1%
3550235 2007.1.3.34 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PDE8A_N 0.52 41.0 4.19e-01 100.0% 84.0%
3385710 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.52 43.0 4.29e-01 100.0% 83.7%
4994189 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.52 44.0 3.89e-01 91.4% 86.4%
4948275 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.52 41.0 4.42e-01 100.0% 99.2%
4968179 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 47.0 3.92e-01 100.0% 94.7%
3950861 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.51 41.0 3.89e-01 99.3% 69.7%
3598412 2002.1.1.67 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.51 42.0 3.01e-01 90.7% 88.1%
4095377 2002.1.1.84 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.51 45.0 3.61e-01 100.0% 85.0%
4936056 2002.1.1.84 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.51 45.0 3.57e-01 99.3% 95.1%
5075117 2002.1.1.84 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.51 45.0 3.57e-01 100.0% 74.8%
4941583 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 43.0 4.14e-01 95.4% 98.3%
5056392 2002.1.1.84 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.50 45.0 3.60e-01 100.0% 86.5%
4999818 2002.1.1.84 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.50 45.0 3.60e-01 100.0% 92.7%
3502689 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 45.0 3.79e-01 99.3% 88.1%
D2 medium residues 158-227
PDB