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NC_048772.1__YP_009846931.1__HWC28_gp132__00132
Bact-VirNC_048772.1__YP_009846931.1__HWC28_gp132__00132
Identity
- Accession:
- NC_048772 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 2588520
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-60
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.87 | 60.0 | 5.21e-01 | 76.9% | 50.0% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.86 | 59.0 | 6.36e-01 | 71.2% | 88.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 59.0 | 5.13e-01 | 78.8% | 90.9% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 64.0 | 6.54e-01 | 90.4% | 100.0% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.77 | 60.0 | 5.17e-01 | 84.6% | 60.5% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.77 | 68.0 | 5.45e-01 | 100.0% | 64.1% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 59.0 | 4.55e-01 | 84.6% | 41.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 58.0 | 5.15e-01 | 84.6% | 62.2% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 64.0 | 4.90e-01 | 100.0% | 42.9% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.73 | 65.0 | 5.53e-01 | 100.0% | 80.7% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 5.48e-01 | 94.2% | 84.9% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 53.0 | 5.07e-01 | 78.8% | 70.5% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 51.0 | 4.51e-01 | 75.0% | 78.4% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 61.0 | 5.08e-01 | 98.1% | 86.2% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.70 | 53.0 | 5.36e-01 | 84.6% | 80.8% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 60.0 | 4.62e-01 | 100.0% | 71.4% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.70 | 59.0 | 4.32e-01 | 94.2% | 42.9% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 60.0 | 4.77e-01 | 100.0% | 80.9% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 56.0 | 4.62e-01 | 100.0% | 81.3% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.68 | 59.0 | 5.07e-01 | 100.0% | 77.6% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.68 | 59.0 | 4.37e-01 | 100.0% | 71.7% |
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.67 | 47.0 | 4.09e-01 | 75.0% | 47.6% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.67 | 50.0 | 3.60e-01 | 80.8% | 41.9% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 49.0 | 4.63e-01 | 82.7% | 78.5% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 50.0 | 4.04e-01 | 84.6% | 43.0% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.66 | 58.0 | 4.84e-01 | 100.0% | 92.4% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 58.0 | 4.45e-01 | 100.0% | 44.5% |
| 3hjjC00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 53.0 | 3.60e-01 | 80.8% | 58.4% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 46.0 | 4.41e-01 | 78.8% | 92.2% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 47.0 | 4.08e-01 | 80.8% | 55.3% |
| 3kbtA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 52.0 | 3.39e-01 | 100.0% | 31.3% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.64 | 46.0 | 4.55e-01 | 80.8% | 77.6% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 45.0 | 3.96e-01 | 76.9% | 80.5% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.60 | 44.0 | 4.29e-01 | 78.8% | 93.0% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 45.0 | 4.03e-01 | 96.2% | 87.0% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.53 | 40.0 | 3.92e-01 | 84.6% | 76.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035839 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.88 | 69.0 | 5.96e-01 | 82.7% | 57.3% |
| 3560446 | 109.4.1.3196 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_8, TPR_12, TPR_16 | 0.87 | 71.0 | 3.89e-01 | 86.5% | 6.6% |
| 3425971 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.87 | 64.0 | 3.65e-01 | 76.9% | 9.6% |
| 3707236 | 3291.1.1.16 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod | 0.87 | 70.0 | 4.64e-01 | 84.6% | 26.3% |
| 3624269 | 109.4.1.2455 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, ANAPC3, TPR_6, TPR_8, TPR_16 | 0.86 | 70.0 | 4.06e-01 | 86.5% | 11.4% |
| 3578494 | 109.4.1.186 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 | 0.86 | 70.0 | 4.42e-01 | 86.5% | 19.7% |
| 3780980 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.86 | 70.0 | 4.41e-01 | 86.5% | 19.6% |
| None | — | 0.86 | 70.0 | 4.60e-01 | 86.5% | 24.3% | |
| 3797503 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 70.0 | 4.54e-01 | 86.5% | 23.1% |
| 3512512 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.85 | 69.0 | 4.49e-01 | 86.5% | 23.1% |
| 3600038 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.85 | 68.0 | 4.28e-01 | 84.6% | 20.4% |
| 4989575 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.85 | 67.0 | 3.70e-01 | 84.6% | 7.0% |
| 3219279 | 109.4.1.200 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14 | 0.84 | 68.0 | 4.94e-01 | 86.5% | 34.6% |
| 4275409 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.84 | 67.0 | 5.10e-01 | 84.6% | 41.8% |
| 4010167 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.84 | 67.0 | 4.24e-01 | 84.6% | 20.4% |
| 3209183 | 192.31.1.0 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 | 0.84 | 68.0 | 7.27e-01 | 90.4% | 100.0% |
| 3556647 | 192.17.1.26 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Med9 | 0.83 | 66.0 | 5.63e-01 | 84.6% | 55.0% |
| 4459514 | 2002.1.1.219 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn | 0.83 | 64.0 | 3.71e-01 | 82.7% | 10.8% |
| 4962483 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.83 | 67.0 | 4.36e-01 | 86.5% | 27.3% |
| 2708987 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 65.0 | 5.66e-01 | 84.6% | 61.3% |
| 5026525 | 633.7.1.0 ↗ | alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like | 0.82 | 73.0 | 5.81e-01 | 96.2% | 91.8% |
| 3592036 | 3291.1.1.16 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod | 0.81 | 64.0 | 4.15e-01 | 84.6% | 21.9% |
| 5004728 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.81 | 64.0 | 5.07e-01 | 84.6% | 46.0% |
| 4286197 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.80 | 63.0 | 5.43e-01 | 86.5% | 55.0% |
| 4973477 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.80 | 67.0 | 5.49e-01 | 90.4% | 60.0% |
| 4243775 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.80 | 71.0 | 6.11e-01 | 98.1% | 92.5% |
| 5019369 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.80 | 61.0 | 3.68e-01 | 82.7% | 15.7% |
| 4206858 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.79 | 61.0 | 4.69e-01 | 84.6% | 52.2% |
| 3597506 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.76 | 53.0 | 4.75e-01 | 75.0% | 76.0% |
| 3725456 | 604.3.1.24 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27980 | 0.75 | 57.0 | 4.86e-01 | 82.7% | 50.6% |
| 3304429 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.75 | 55.0 | 5.12e-01 | 78.8% | 66.2% |
| 4860885 | 633.6.1.6 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACAD9-ACADV_C | 0.75 | 58.0 | 4.59e-01 | 84.6% | 47.6% |
| 2663455 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.75 | 59.0 | 5.41e-01 | 86.5% | 82.4% |
| 4358621 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.73 | 54.0 | 4.77e-01 | 80.8% | 57.0% |
| 3516130 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.72 | 63.0 | 4.68e-01 | 100.0% | 67.4% |
| 3702282 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 59.0 | 4.39e-01 | 100.0% | 82.8% |
| 3220228 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.70 | 58.0 | 4.73e-01 | 98.1% | 83.8% |
| 3757568 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.69 | 56.0 | 4.57e-01 | 96.2% | 83.8% |
| 3929285 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.68 | 56.0 | 4.63e-01 | 98.1% | 88.0% |
| 3522861 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.67 | 57.0 | 4.65e-01 | 100.0% | 83.8% |
| 5037104 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.66 | 55.0 | 4.17e-01 | 94.2% | 43.2% |
| 3973458 | 611.4.1.2 ↗ | alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C | 0.66 | 51.0 | 3.86e-01 | 86.5% | 38.5% |
| 3755130 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.65 | 53.0 | 4.37e-01 | 98.1% | 83.8% |
| 3279737 | 564.1.1.4 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N | 0.60 | 54.0 | 5.13e-01 | 100.0% | 93.3% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.55 | 44.0 | 4.37e-01 | 86.5% | 100.0% |