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NC_048772.1__YP_009846962.1__HWC28_gp163__00163

Bact-Vir

NC_048772.1__YP_009846962.1__HWC28_gp163__00163

Identity

Accession:
NC_048772 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_4L372XY

TaxID: 2588520

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-68
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.60 40.0 3.79e-01 70.5% 67.3%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 36.0 3.56e-01 77.3% 76.5%
2yqpA00 3.30.60.220 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 34.0 3.18e-01 70.5% 51.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623367 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.72 49.0 3.78e-01 70.5% 36.8%
3993815 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.67 47.0 3.63e-01 100.0% 33.0%
3368882 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.66 45.0 4.69e-01 70.5% 77.5%
3229366 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.66 45.0 4.20e-01 100.0% 58.2%
3890373 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.64 44.0 4.25e-01 100.0% 64.0%
3759578 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.62 42.0 3.80e-01 100.0% 51.7%
3822672 376.1.1.59 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box 0.62 42.0 3.78e-01 100.0% 51.7%
3353341 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.60 40.0 3.54e-01 100.0% 46.2%
3863246 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.56 37.0 2.96e-01 70.5% 31.6%
3824943 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.56 38.0 3.24e-01 100.0% 38.7%
3392012 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.55 36.0 2.35e-01 70.5% 14.3%
4230995 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.53 35.0 3.31e-01 72.7% 51.7%
3268724 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.53 35.0 2.34e-01 100.0% 15.5%
3523201 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.51 36.0 2.63e-01 79.5% 75.2%
3817972 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.50 34.0 3.39e-01 72.7% 93.3%