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NC_048772.1__YP_009847018.1__HWC28_gp219__00219

Bact-Vir

NC_048772.1__YP_009847018.1__HWC28_gp219__00219

Identity

Accession:
NC_048772 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_4L372XY

TaxID: 2588520

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-98
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 43.0 3.90e-01 80.2% 57.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.13e-01 81.2% 64.2%
1fx2A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 48.0 3.71e-01 100.0% 75.7%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 43.0 4.32e-01 84.4% 86.3%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 47.0 3.90e-01 100.0% 81.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 46.0 3.79e-01 100.0% 79.3%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 43.0 4.29e-01 89.6% 89.9%
2o61A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.59e-01 78.1% 98.2%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 27.0 3.03e-01 70.8% 64.0%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 40.0 3.16e-01 86.5% 91.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592490 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.07e-01 81.2% 95.0%
3738674 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.65 50.0 4.80e-01 81.2% 79.1%
3464534 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.64 49.0 3.02e-01 81.2% 14.8%
3657248 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.64 49.0 4.78e-01 81.2% 78.1%
3881281 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.62 44.0 4.80e-01 82.3% 93.3%
5053177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.95e-01 84.4% 47.9%
3727442 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.60 47.0 4.28e-01 82.3% 68.0%
5025980 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.59 48.0 4.95e-01 100.0% 92.2%
3783244 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 47.0 3.54e-01 100.0% 36.9%
3853184 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.58 44.0 3.80e-01 82.3% 63.2%
5040946 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.58 45.0 4.80e-01 100.0% 95.3%
3181301 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.57 49.0 4.23e-01 92.7% 70.3%
3483770 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.56 49.0 4.10e-01 96.9% 95.2%
4994902 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.56 46.0 4.50e-01 100.0% 81.0%
5022418 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 30.0 3.43e-01 100.0% 72.3%
3385565 320.1.1.16 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 0.56 37.0 4.00e-01 88.5% 83.3%
3597257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.37e-01 81.2% 91.3%
3964912 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 29.0 3.15e-01 74.0% 59.5%
3625937 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.54 41.0 3.52e-01 79.2% 53.3%
3255511 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.54 45.0 3.62e-01 100.0% 45.8%
4938000 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 40.0 4.07e-01 87.5% 82.1%
3264027 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.19e-01 81.2% 87.8%
5030783 242.1.1.3 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.53 40.0 4.05e-01 87.5% 83.2%
4998393 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 40.0 3.88e-01 87.5% 72.7%
5048120 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.50 44.0 3.08e-01 100.0% 84.1%
3371431 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.50 30.0 2.87e-01 71.9% 51.8%
5081354 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.50 37.0 3.10e-01 81.2% 95.1%