←Back to structures

NC_048775.1__YP_009847458.1__HWC31_gp120__00120

Bact-Vir

NC_048775.1__YP_009847458.1__HWC31_gp120__00120

Identity

Accession:
NC_048775 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Lahexavirus› Aeromonas_phage_LAh_8

TaxID: 2591032

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-97
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00086__D6-65
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 49.0 5.15e-01 74.2% 91.4%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 52.0 5.34e-01 100.0% 88.9%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 51.0 4.91e-01 89.4% 71.4%
2kk4A00 3.10.20.840 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 51.0 4.59e-01 92.4% 58.9%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.19e-01 77.3% 62.2%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 5.10e-01 93.9% 90.5%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 4.13e-01 90.9% 74.8%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.25e-01 74.2% 66.7%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 5.04e-01 84.8% 92.1%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 4.93e-01 84.8% 89.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.61 46.0 3.69e-01 81.8% 44.0%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 4.80e-01 84.8% 90.9%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.25e-01 89.4% 71.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.73e-01 71.2% 64.0%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 4.33e-01 84.8% 74.7%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.38e-01 95.5% 74.5%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.58 40.0 2.97e-01 74.2% 61.3%
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 3.65e-01 89.4% 60.0%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 44.0 3.39e-01 87.9% 88.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.00e-01 93.9% 72.6%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.56 35.0 3.73e-01 92.4% 73.7%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 33.0 2.66e-01 74.2% 28.8%
4w1vA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 41.0 3.07e-01 78.8% 60.8%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.13e-01 77.3% 75.6%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.44e-01 84.8% 56.8%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.58e-01 93.9% 60.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 46.0 3.99e-01 98.5% 75.5%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.62e-01 98.5% 54.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.52 41.0 4.07e-01 87.9% 90.1%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 42.0 2.85e-01 92.4% 62.1%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 39.0 3.36e-01 81.8% 71.3%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 3.41e-01 97.0% 68.6%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.84e-01 83.3% 81.7%
3uh9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 2.95e-01 75.8% 70.7%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.51 36.0 3.14e-01 75.8% 68.6%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.90e-01 75.8% 66.4%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.53e-01 81.8% 94.0%
1b5fB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 37.0 3.45e-01 80.3% 87.4%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 39.0 3.63e-01 90.9% 73.9%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 38.0 3.48e-01 86.4% 78.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010981 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 61.0 6.64e-01 86.4% 94.5%
5040273 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.70 53.0 5.13e-01 90.9% 72.0%
4968844 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.70 55.0 5.19e-01 93.9% 71.2%
5034646 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.70 53.0 4.96e-01 90.9% 67.5%
4406361 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.69 50.0 4.94e-01 97.0% 72.9%
1779553 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.66 51.0 4.59e-01 92.4% 58.9%
4966867 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.66 51.0 4.85e-01 92.4% 70.0%
4647178 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.65 50.0 3.27e-01 86.4% 29.1%
5044072 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.64 49.0 4.68e-01 80.3% 81.3%
3486425 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.64 43.0 3.01e-01 71.2% 60.9%
3642858 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 43.0 2.84e-01 71.2% 57.5%
4996494 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.63 44.0 4.09e-01 77.3% 56.5%
3261492 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 43.0 2.98e-01 71.2% 62.7%
4342936 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.63 47.0 4.03e-01 80.3% 58.1%
1030947 4.1.1.114 ↗ beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.63 43.0 4.25e-01 74.2% 66.7%
3269447 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 43.0 2.80e-01 71.2% 59.6%
4589357 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.62 49.0 3.68e-01 84.8% 50.0%
3706107 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 44.0 2.99e-01 72.7% 63.9%
4289166 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.62 49.0 4.77e-01 95.5% 77.3%
4960648 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.61 43.0 4.03e-01 78.8% 60.0%
3385491 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.61 48.0 3.61e-01 84.8% 44.4%
4046191 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.61 48.0 4.65e-01 84.8% 77.3%
4385597 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.61 48.0 4.40e-01 93.9% 64.4%
152457 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.60 47.0 3.65e-01 84.8% 54.4%
4933650 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.60 47.0 4.55e-01 84.8% 77.3%
4058131 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.60 48.0 4.48e-01 84.8% 75.0%
4177859 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.60 44.0 4.48e-01 78.8% 83.1%
5075031 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.60 47.0 4.42e-01 84.8% 76.2%
4390251 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 46.0 4.81e-01 83.3% 93.3%
4134041 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.53e-01 98.5% 70.6%
4077815 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.59 47.0 4.38e-01 84.8% 75.0%
2429554 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.59 49.0 3.11e-01 92.4% 39.3%
3281927 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 49.0 4.00e-01 92.4% 52.0%
4250117 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.58 46.0 4.32e-01 84.8% 73.8%
4981994 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.58 46.0 4.32e-01 84.8% 75.0%
4985754 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 48.0 4.28e-01 92.4% 67.4%
4383068 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 4.13e-01 83.3% 87.5%
4019088 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.30e-01 93.9% 43.1%
4353811 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 39.0 3.83e-01 71.2% 88.6%
4026368 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 39.0 2.76e-01 72.7% 66.5%
4024568 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 43.0 2.86e-01 86.4% 36.3%
3799940 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 43.0 2.53e-01 89.4% 24.6%
4238046 3112.1.1.1 ↗ beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › YabP 0.54 43.0 4.40e-01 90.9% 100.0%
4525377 3112.1.1.1 ↗ beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › YabP 0.53 43.0 4.29e-01 90.9% 92.6%
3205889 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.52 42.0 2.76e-01 93.9% 38.8%
5049162 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 43.0 3.34e-01 98.5% 43.5%
3169522 5.1.5.200 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF30137 0.51 42.0 2.58e-01 98.5% 25.5%
4033541 7516.1.1.7 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › UDPGP 0.50 42.0 2.64e-01 95.5% 76.7%