Back to structures

NC_048776.1__YP_009847545.1__HWC32_gp064__00064

Bact-Vir

NC_048776.1__YP_009847545.1__HWC32_gp064__00064

Identity

Accession:
NC_048776 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.12e-01 100.0% 57.7%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.70 47.0 4.04e-01 70.4% 52.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.45e-01 100.0% 43.6%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 50.0 4.69e-01 81.5% 67.6%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 45.0 3.45e-01 72.2% 34.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.54e-01 100.0% 49.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 46.0 3.61e-01 74.1% 34.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 44.0 3.41e-01 72.2% 31.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 45.0 3.47e-01 75.9% 57.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.64 46.0 4.03e-01 77.8% 83.7%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 4.16e-01 92.6% 91.6%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.88e-01 85.2% 69.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 45.0 4.20e-01 100.0% 62.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.60 50.0 5.00e-01 100.0% 91.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.62e-01 100.0% 73.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 44.0 4.16e-01 100.0% 64.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.59 47.0 3.54e-01 94.4% 61.0%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 2.81e-01 88.9% 88.7%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.70e-01 98.1% 69.8%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 39.0 2.53e-01 72.2% 31.8%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.77e-01 98.1% 49.6%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 47.0 3.65e-01 100.0% 60.2%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.56 49.0 3.81e-01 100.0% 65.3%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 3.69e-01 98.1% 75.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.08e-01 100.0% 77.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.55 48.0 2.93e-01 100.0% 15.4%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.33e-01 100.0% 48.9%
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.55 44.0 3.15e-01 94.4% 66.3%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.61e-01 85.2% 93.3%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.54 47.0 3.99e-01 100.0% 80.2%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.56e-01 100.0% 43.4%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.25e-01 100.0% 76.8%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.70e-01 98.1% 85.4%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.41e-01 83.3% 64.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.01e-01 100.0% 72.5%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 36.0 2.91e-01 72.2% 37.4%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.80e-01 100.0% 16.3%
3f3zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 46.0 4.01e-01 98.1% 93.9%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.14e-01 83.3% 87.0%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.90e-01 100.0% 83.5%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 35.0 2.95e-01 72.2% 90.3%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 36.0 2.79e-01 72.2% 79.2%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.59e-01 92.6% 91.1%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.43e-01 98.1% 97.3%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.51e-01 98.1% 52.5%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 36.0 2.92e-01 72.2% 71.9%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.60e-01 98.1% 78.9%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 42.0 3.19e-01 100.0% 74.8%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 69.0 5.77e-01 100.0% 53.3%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.82 68.0 5.88e-01 100.0% 60.0%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 68.0 5.31e-01 100.0% 46.4%
5002173 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 63.0 5.26e-01 90.7% 90.0%
3598854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 55.0 4.05e-01 77.8% 55.0%
3757490 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.74 65.0 5.42e-01 100.0% 65.3%
2579126 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.73 56.0 4.07e-01 81.5% 54.9%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.73 60.0 4.77e-01 100.0% 45.5%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.72 54.0 4.11e-01 79.6% 57.6%
3219409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.38e-01 100.0% 76.7%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.72 59.0 4.79e-01 100.0% 47.6%
3774525 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.71 49.0 3.39e-01 72.2% 21.7%
None 0.70 50.0 3.48e-01 74.1% 24.1%
3482706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 4.37e-01 100.0% 46.5%
3485727 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.69 49.0 4.09e-01 74.1% 42.1%
4988502 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.69 48.0 5.17e-01 72.2% 93.3%
4602887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 52.0 4.72e-01 81.5% 90.5%
3997678 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 49.0 3.89e-01 77.8% 40.9%
4997227 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.67 48.0 3.77e-01 77.8% 37.5%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 45.0 3.25e-01 72.2% 29.7%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.66 56.0 4.54e-01 100.0% 49.1%
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.66 56.0 5.17e-01 100.0% 74.0%
3464303 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.65 53.0 4.00e-01 100.0% 78.1%
3447797 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.64 53.0 3.99e-01 100.0% 72.7%
3342228 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.64 53.0 3.86e-01 100.0% 75.9%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.63 53.0 3.89e-01 100.0% 48.5%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.63 49.0 3.12e-01 85.2% 57.8%
4968862 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.89e-01 96.3% 95.6%
3742215 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.62 45.0 3.87e-01 77.8% 76.7%
2958186 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 45.0 4.47e-01 77.8% 78.6%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.65e-01 100.0% 65.9%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.15e-01 100.0% 46.1%
4945682 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 3.61e-01 85.2% 39.2%
3938274 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.61 52.0 3.55e-01 100.0% 71.2%
1627398 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.60 39.0 3.92e-01 70.4% 65.5%
3892200 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.60 49.0 3.34e-01 100.0% 91.5%
3297966 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.59 48.0 3.91e-01 100.0% 70.0%
5013239 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.59 48.0 3.99e-01 100.0% 57.3%
3559952 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.59 49.0 3.31e-01 100.0% 92.5%
4226251 375.1.1.252 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.59 45.0 4.36e-01 98.1% 75.0%
3222756 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.58 43.0 2.79e-01 81.5% 93.8%
3598220 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.57e-01 92.6% 78.6%
3195660 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 48.0 3.36e-01 100.0% 53.2%
4956582 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.76e-01 98.1% 79.2%
3547737 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.57 46.0 2.85e-01 94.4% 44.4%
3592181 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.57 48.0 3.71e-01 100.0% 42.2%
4785457 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.57 42.0 2.67e-01 83.3% 88.6%
3490071 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.56 45.0 3.14e-01 100.0% 91.5%
3680900 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.56 45.0 3.68e-01 98.1% 46.7%
3736443 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.56 47.0 2.99e-01 100.0% 42.9%
5047681 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 41.0 3.32e-01 85.2% 39.2%
3838288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 3.82e-01 100.0% 87.0%
3593482 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.55 41.0 3.43e-01 81.5% 97.0%
4942589 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.55 45.0 4.22e-01 100.0% 72.9%
3241172 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 44.0 3.65e-01 96.3% 80.0%
2998571 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.55 41.0 2.61e-01 85.2% 28.7%
3297271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 2.53e-01 75.9% 22.0%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.55 47.0 4.39e-01 100.0% 94.3%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.54 42.0 3.97e-01 100.0% 68.6%
3569729 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.54 44.0 3.24e-01 94.4% 87.1%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 36.0 2.91e-01 74.1% 32.3%
3347865 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 46.0 3.61e-01 100.0% 60.8%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.54 45.0 3.99e-01 96.3% 73.8%
4562544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.49e-01 94.4% 88.7%
3715886 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 2.78e-01 100.0% 19.2%
3990973 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.53 39.0 2.94e-01 85.2% 41.2%
3725926 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.53 41.0 3.56e-01 85.2% 87.1%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.84e-01 100.0% 66.7%
3210606 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 42.0 3.40e-01 98.1% 56.8%
4991994 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 4.03e-01 98.1% 89.1%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.52 44.0 4.02e-01 100.0% 72.0%
3716770 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.52 41.0 3.38e-01 90.7% 73.3%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.51 40.0 3.80e-01 100.0% 71.4%
4990492 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 4.11e-01 94.4% 98.0%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 4.17e-01 96.3% 100.0%
4937101 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 37.0 3.03e-01 85.2% 40.8%