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NC_048776.1__YP_009847558.1__HWC32_gp077__00077

Bact-Vir

NC_048776.1__YP_009847558.1__HWC32_gp077__00077

Identity

Accession:
NC_048776 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Lahexavirus› Aeromonas_phage_LAh_9

TaxID: 2591033

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: rep: ON014754.1__UQS95015.1__Pam2_135__00135__D2-58
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.80 65.0 5.94e-01 86.1% 97.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.78 62.0 4.68e-01 86.1% 94.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.77 61.0 5.57e-01 84.7% 94.7%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.74 66.0 5.16e-01 100.0% 79.6%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.73 59.0 5.11e-01 86.1% 67.6%
4dixA01 2.60.40.2700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 50.0 4.72e-01 86.1% 60.9%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 52.0 4.72e-01 86.1% 58.9%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.70 56.0 5.10e-01 86.1% 64.6%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 54.0 4.35e-01 84.7% 86.8%
5ynrA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.68 60.0 4.89e-01 100.0% 77.5%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.68 61.0 4.93e-01 100.0% 78.7%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.67 59.0 4.86e-01 100.0% 82.0%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 41.0 3.46e-01 73.6% 36.4%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.33e-01 86.1% 66.7%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.54e-01 86.1% 70.4%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 45.0 4.49e-01 86.1% 68.8%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 45.0 4.51e-01 86.1% 73.6%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 53.0 4.84e-01 94.4% 92.0%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.65e-01 86.1% 74.5%
3utoB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 46.0 4.17e-01 86.1% 56.0%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 4.48e-01 86.1% 68.2%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.62 44.0 4.60e-01 77.8% 85.7%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.61 43.0 4.13e-01 75.0% 92.9%
4g6vB00 3.30.70.2920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.42e-01 91.7% 100.0%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 48.0 3.55e-01 93.1% 88.3%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.96e-01 90.3% 51.1%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.59 50.0 3.88e-01 98.6% 73.8%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.58 47.0 3.32e-01 91.7% 48.8%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.08e-01 86.1% 68.3%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 47.0 3.95e-01 88.9% 67.5%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.91e-01 97.2% 52.4%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 4.07e-01 87.5% 61.9%
4kg8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.65e-01 97.2% 47.3%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.68e-01 88.9% 46.7%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 43.0 3.98e-01 87.5% 76.0%
5hv6A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 43.0 3.59e-01 86.1% 96.1%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 46.0 3.95e-01 97.2% 76.2%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.69e-01 95.8% 48.6%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 2.96e-01 81.9% 54.8%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.59e-01 95.8% 44.6%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 43.0 3.44e-01 87.5% 95.8%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.85e-01 97.2% 72.2%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.42e-01 94.4% 70.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 36.0 3.11e-01 70.8% 95.0%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 43.0 2.91e-01 87.5% 71.9%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 45.0 3.19e-01 100.0% 76.5%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 45.0 3.30e-01 100.0% 40.2%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.52 43.0 3.78e-01 98.6% 74.6%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 43.0 3.49e-01 95.8% 56.9%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.36e-01 77.8% 50.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 3.60e-01 75.0% 69.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 38.0 3.17e-01 77.8% 51.9%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.52e-01 100.0% 44.9%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 42.0 3.37e-01 88.9% 68.8%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.38e-01 93.1% 52.3%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 40.0 3.66e-01 86.1% 94.9%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.40e-01 94.4% 50.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 40.0 3.79e-01 90.3% 100.0%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.39e-01 94.4% 68.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4378815 302.2.1.1 ↗ a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small 0.73 58.0 5.30e-01 86.1% 70.5%
3288140 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.69 59.0 5.13e-01 100.0% 96.7%
4941474 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 56.0 5.06e-01 87.5% 77.9%
3597544 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.68 58.0 4.91e-01 100.0% 83.8%
4327245 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 47.0 3.71e-01 73.6% 37.1%
3700526 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 53.0 4.61e-01 86.1% 68.2%
3275811 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.65 58.0 4.74e-01 100.0% 77.0%
3408252 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 50.0 4.41e-01 87.5% 56.2%
4975793 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.65 58.0 4.77e-01 100.0% 82.3%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 45.0 4.98e-01 77.8% 94.5%
3734833 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.65 46.0 4.35e-01 76.4% 96.7%
4973990 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.64 47.0 3.09e-01 77.8% 62.2%
5003413 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.64 49.0 4.08e-01 84.7% 96.9%
4535557 220.1.1.192 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.62 44.0 3.30e-01 100.0% 28.8%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.62 49.0 4.98e-01 94.4% 89.9%
3934346 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.27e-01 86.1% 58.2%
3591156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.27e-01 86.1% 64.4%
199962 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.62 44.0 4.60e-01 77.8% 85.7%
3480553 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.61 48.0 3.93e-01 87.5% 88.6%
3609893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 4.23e-01 87.5% 57.3%
4941843 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 50.0 4.02e-01 90.3% 47.4%
3199763 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.60 45.0 3.84e-01 100.0% 47.2%
4030365 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.60 44.0 3.89e-01 83.3% 53.3%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.60 51.0 3.79e-01 100.0% 47.6%
3465572 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 52.0 4.58e-01 100.0% 70.0%
3593279 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 47.0 3.20e-01 87.5% 30.7%
3396597 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.58 45.0 3.51e-01 86.1% 61.2%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.58 41.0 4.33e-01 79.2% 83.1%
3925198 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.57 42.0 2.78e-01 79.2% 71.3%
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.57 43.0 3.57e-01 83.3% 54.8%
5075866 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 42.0 4.12e-01 81.9% 100.0%
4974741 304.125.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.56 46.0 4.47e-01 97.2% 100.0%
3599827 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.45e-01 87.5% 52.8%
3312745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.41e-01 86.1% 62.5%
3329759 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 38.0 2.23e-01 88.9% 7.5%
3673362 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 49.0 3.82e-01 100.0% 75.6%
3994036 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 3.04e-01 91.7% 24.4%
3832603 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.53 39.0 2.28e-01 80.6% 12.2%
3651007 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 44.0 2.60e-01 98.6% 20.0%
3831946 109.4.1.1476 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.52 39.0 2.28e-01 80.6% 13.5%
3818971 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 44.0 2.63e-01 98.6% 26.2%
3684103 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 42.0 2.49e-01 90.3% 15.1%
None — 0.51 43.0 3.59e-01 98.6% 97.1%
3849830 11.1.1.871 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 0.51 41.0 3.40e-01 90.3% 63.7%
3378740 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.50 39.0 2.22e-01 86.1% 36.4%