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NC_048777.1__YP_009847639.1__HWC33_gp11__00011

Bact-Vir

NC_048777.1__YP_009847639.1__HWC33_gp11__00011

Identity

Accession:
NC_048777 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tinytimothyvirus› Microbacterium_phage_TinyTimothy

TaxID: 2583039

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 46.0 4.44e-01 80.0% 67.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 2.86e-01 76.7% 18.2%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 44.0 4.17e-01 78.3% 61.6%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 47.0 4.58e-01 88.3% 73.5%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 3.35e-01 80.0% 32.2%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.60 44.0 3.75e-01 76.7% 70.8%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 44.0 3.85e-01 78.3% 55.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 43.0 3.95e-01 78.3% 60.8%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 43.0 3.68e-01 78.3% 52.1%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 46.0 4.25e-01 86.7% 89.7%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 3.80e-01 80.0% 97.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 3.91e-01 76.7% 64.4%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 51.0 4.08e-01 100.0% 76.3%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 42.0 3.74e-01 78.3% 95.1%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 3.65e-01 100.0% 65.8%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.55 40.0 3.94e-01 78.3% 77.6%
3hssA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.10e-01 100.0% 75.9%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.54 39.0 3.91e-01 78.3% 78.7%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 43.0 4.07e-01 86.7% 94.5%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.53 46.0 4.28e-01 96.7% 91.9%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.52 43.0 4.07e-01 100.0% 77.6%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.52 44.0 3.64e-01 91.7% 91.1%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 37.0 3.41e-01 80.0% 63.4%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 44.0 3.86e-01 96.7% 69.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 37.0 3.51e-01 80.0% 66.7%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 44.0 3.86e-01 98.3% 70.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3224003 9001.1.1.3 ↗ alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT 0.64 46.0 4.20e-01 76.7% 58.7%
4641795 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.63 46.0 4.54e-01 78.3% 78.5%
3231388 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.62 55.0 5.21e-01 100.0% 84.3%
3925085 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.61 50.0 5.01e-01 91.7% 95.0%
4375086 605.1.1.108 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.58 43.0 4.54e-01 81.7% 85.5%
2067201 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.57 43.0 3.97e-01 80.0% 94.8%
4961796 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.57 44.0 3.80e-01 81.7% 73.3%
4646268 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 44.0 4.19e-01 83.3% 81.4%
3456370 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 41.0 3.02e-01 78.3% 31.0%
3269637 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.54 38.0 3.13e-01 78.3% 39.1%
4349607 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.52 44.0 3.64e-01 96.7% 93.6%
3718782 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 40.0 2.85e-01 95.0% 27.0%
4378106 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.50 44.0 3.60e-01 100.0% 54.8%