Back to structures

NC_048778.1__YP_009847692.1__HWC34_gp11__00011

Bact-Vir

NC_048778.1__YP_009847692.1__HWC34_gp11__00011

Identity

Accession:
NC_048778 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-72
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 58.0 5.04e-01 78.5% 87.5%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 51.0 4.41e-01 87.7% 47.0%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 51.0 4.61e-01 87.7% 54.0%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.73 60.0 4.29e-01 92.3% 62.2%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.73 56.0 4.76e-01 84.6% 54.1%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.73 56.0 4.07e-01 84.6% 32.3%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 56.0 3.52e-01 84.6% 17.9%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 50.0 3.79e-01 73.8% 85.8%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.69 53.0 5.08e-01 86.2% 88.5%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 55.0 4.70e-01 87.7% 79.4%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.69 54.0 3.73e-01 86.2% 38.1%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 54.0 4.05e-01 84.6% 40.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.68 49.0 4.03e-01 75.4% 93.9%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 53.0 3.45e-01 87.7% 63.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 48.0 3.66e-01 76.9% 72.4%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 58.0 4.58e-01 100.0% 67.2%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 4.37e-01 86.2% 83.0%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 53.0 3.99e-01 87.7% 88.7%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 39.0 4.27e-01 75.4% 72.7%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 50.0 3.74e-01 86.2% 42.8%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 50.0 4.26e-01 86.2% 87.5%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 3.95e-01 98.5% 55.9%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 49.0 4.53e-01 87.7% 89.4%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.62 48.0 3.50e-01 87.7% 71.1%
2y2zA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 47.0 3.53e-01 83.1% 84.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 47.0 3.90e-01 84.6% 74.2%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.61 44.0 4.23e-01 86.2% 64.1%
4rfsS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.61 52.0 3.86e-01 100.0% 83.4%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.61 44.0 3.22e-01 75.4% 35.2%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 47.0 3.61e-01 86.2% 92.0%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 43.0 3.73e-01 80.0% 88.3%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.59 44.0 3.45e-01 84.6% 68.1%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.58 44.0 3.55e-01 84.6% 48.5%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 50.0 3.93e-01 96.9% 81.3%
3p0uA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 47.0 3.32e-01 100.0% 46.4%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 43.0 4.10e-01 89.2% 92.3%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.60e-01 96.9% 76.8%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 38.0 3.13e-01 75.4% 81.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 44.0 3.33e-01 100.0% 91.0%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.50 37.0 3.08e-01 81.5% 88.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272597 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.84 67.0 5.02e-01 84.6% 37.9%
3919051 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.83 65.0 4.54e-01 84.6% 28.7%
3548480 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.82 65.0 5.03e-01 86.2% 40.7%
3778248 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.82 65.0 3.78e-01 86.2% 10.5%
3447221 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.81 65.0 5.31e-01 86.2% 59.1%
3298666 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.80 63.0 3.65e-01 84.6% 10.7%
3347236 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.80 62.0 4.89e-01 84.6% 41.5%
3393543 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.80 64.0 3.69e-01 86.2% 10.7%
5040466 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.77 61.0 5.87e-01 84.6% 89.2%
3712266 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.74 59.0 4.64e-01 86.2% 61.5%
3858558 4207.1.2.5 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 0.74 53.0 5.07e-01 78.5% 65.3%
3419005 109.4.1.929 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ECM29 0.73 57.0 3.34e-01 84.6% 11.6%
4033204 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.73 51.0 3.50e-01 72.3% 32.3%
3470889 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.72 53.0 3.83e-01 78.5% 41.1%
3652408 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.72 57.0 5.06e-01 87.7% 69.5%
3703277 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.71 58.0 5.69e-01 87.7% 95.7%
3598135 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.71 56.0 5.16e-01 86.2% 81.2%
3765458 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.71 56.0 3.91e-01 84.6% 66.2%
3204604 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.70 51.0 4.95e-01 78.5% 84.0%
3871897 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.70 56.0 3.90e-01 87.7% 63.3%
3589741 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.68 49.0 3.38e-01 75.4% 34.0%
4030302 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.67 46.0 3.67e-01 72.3% 93.3%
3188597 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 53.0 4.76e-01 87.7% 86.7%
3495759 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.66 47.0 3.11e-01 75.4% 82.9%
3637046 192.8.1.327 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PigL_N 0.65 44.0 3.77e-01 70.8% 75.5%
3843220 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.64 49.0 3.47e-01 84.6% 61.9%
3960011 150.8.1.2 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › EspB_PPE 0.64 44.0 3.33e-01 72.3% 88.7%
3366153 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 50.0 3.76e-01 87.7% 91.8%
3377360 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.63 50.0 4.06e-01 84.6% 89.2%
4025746 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.63 45.0 3.34e-01 75.4% 79.4%
5060383 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 48.0 4.64e-01 87.7% 96.0%
3957445 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.61 44.0 3.70e-01 76.9% 58.3%
3972582 5050.1.1.60 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 0.61 47.0 3.48e-01 90.8% 72.5%
4965518 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.61 53.0 4.48e-01 95.4% 97.1%
3864123 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.60 46.0 3.81e-01 87.7% 65.4%
3968917 5050.1.1.60 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 0.60 48.0 3.45e-01 92.3% 70.2%
3770817 601.1.2.47 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL 0.60 46.0 3.80e-01 87.7% 65.4%
3228302 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.59 41.0 3.49e-01 75.4% 97.5%
3523264 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.59 46.0 3.76e-01 87.7% 65.4%
4927596 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.59 48.0 3.95e-01 95.4% 83.1%
4113314 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 46.0 3.24e-01 89.2% 71.6%
3485322 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 45.0 3.65e-01 86.2% 65.4%
4956253 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.58 41.0 3.60e-01 76.9% 86.7%
3860575 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.58 46.0 3.31e-01 90.8% 83.7%
3993852 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 41.0 3.27e-01 78.5% 47.3%
3913809 150.1.1.101 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL 0.58 45.0 3.51e-01 87.7% 55.3%
3175888 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.57 43.0 3.77e-01 86.2% 62.7%
3471712 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.57 44.0 3.70e-01 89.2% 83.2%
3264876 604.12.1.42 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF202 0.57 45.0 3.94e-01 87.7% 77.0%
3845184 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.56 44.0 3.30e-01 90.8% 86.3%
3316145 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 47.0 3.51e-01 96.9% 66.1%
3472309 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.56 43.0 3.56e-01 87.7% 65.4%
4647835 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 42.0 2.95e-01 84.6% 83.9%
3988293 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 47.0 3.48e-01 100.0% 86.3%
3410365 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.55 41.0 2.59e-01 81.5% 17.9%
3217547 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 46.0 3.30e-01 98.5% 76.7%
1064799 601.46.1.0 alpha bundles › Four-helical up-and-down bundle › Regulatory CZB domain of diguanylate cyclase YdeH › Regulatory CZB domain of diguanylate cyclase YdeH 0.54 45.0 3.84e-01 92.3% 81.7%
5083917 5050.1.1.60 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 0.54 45.0 2.96e-01 100.0% 45.1%
3709018 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 37.0 2.89e-01 76.9% 76.1%
5025850 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 44.0 3.17e-01 100.0% 73.3%