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NC_048779.1__YP_009847835.1__HWC35_gp099__00099

Bact-Vir

Identity

Accession:: NC_048779 ↗
Kingdom:: phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Aphroditevirus› Vibrio_phage_USC-1

TaxID: 2592615

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-191

PDB

Domain cluster: rep: OP589283.1__UYE93481.1__X__00084__D167-308

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z16B01	1.20.91.10	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1	0.67	32.0	4.23e-01	96.4%	82.1%
4u2xF00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.60	40.0	3.78e-01	82.0%	54.3%
2cmrA00	1.20.58.1860	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	47.0	4.21e-01	83.5%	92.2%
3rauA00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.58	51.0	3.86e-01	100.0%	46.1%
1ecaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	38.0	3.91e-01	70.5%	86.0%
2dg8D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	43.0	4.06e-01	84.2%	95.4%
1ldjA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.54	40.0	4.22e-01	77.0%	95.2%
5kbwB00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.53	45.0	4.25e-01	92.1%	88.3%
2ap3A00	1.20.120.570	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like	0.52	37.0	3.34e-01	71.9%	79.2%
3lxzB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	38.0	3.84e-01	77.0%	75.4%
4o6mA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.52	39.0	3.53e-01	78.4%	88.2%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	45.0	4.37e-01	100.0%	89.2%
2qgmA03	1.20.1440.30	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain	0.50	37.0	3.96e-01	87.1%	92.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3487084	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	41.0	4.22e-01	73.4%	64.4%
4547498	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	49.0	4.03e-01	100.0%	72.1%
3501934	626.1.1.1 ↗	alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2	0.54	46.0	3.42e-01	92.1%	66.1%
4966516	604.12.1.142 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NfeD_membrane	0.53	36.0	3.78e-01	71.2%	74.6%
3250233	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	36.0	3.33e-01	70.5%	66.5%
4988860	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.51	42.0	3.91e-01	88.5%	97.1%
3178496	109.4.1.1406 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Vac14_Fab1_bd	0.51	45.0	3.47e-01	97.8%	63.5%
None	—		0.51	41.0	3.23e-01	100.0%	39.0%