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NC_048784.1__YP_009848444.1__HWC40_gp54__00054
Bact-VirNC_048784.1__YP_009848444.1__HWC40_gp54__00054
Identity
- Accession:
- NC_048784 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
TaxID: 2591132
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-126
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.67 | 34.0 | 4.62e-01 | 72.1% | 100.0% |
| 2q2tA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 44.0 | 4.50e-01 | 77.5% | 100.0% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.59 | 41.0 | 3.50e-01 | 72.1% | 91.2% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.58 | 41.0 | 4.58e-01 | 80.2% | 94.2% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 43.0 | 4.72e-01 | 81.1% | 98.9% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 43.0 | 4.34e-01 | 79.3% | 95.5% |
| 1gd7A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 4.46e-01 | 96.4% | 83.5% |
| 1b7yB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 4.23e-01 | 96.4% | 81.0% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.63e-01 | 80.2% | 80.9% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.44e-01 | 79.3% | 57.0% |
| 3t7aA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 36.0 | 2.98e-01 | 74.8% | 41.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3222223 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 43.0 | 5.40e-01 | 71.2% | 100.0% |
| 3687458 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.63 | 41.0 | 4.83e-01 | 76.6% | 97.3% |
| 4052975 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 45.0 | 4.54e-01 | 99.1% | 79.1% |
| 3261376 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 42.0 | 4.63e-01 | 73.9% | 92.2% |
| 4025207 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.59 | 45.0 | 4.18e-01 | 80.2% | 65.7% |
| 4953069 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.59 | 44.0 | 4.26e-01 | 78.4% | 72.0% |
| 4301123 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 40.0 | 4.62e-01 | 75.7% | 97.5% |
| 4272096 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.57 | 43.0 | 4.72e-01 | 80.2% | 97.8% |
| 4995609 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 42.0 | 3.88e-01 | 79.3% | 75.9% |
| 4982943 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 42.0 | 3.92e-01 | 79.3% | 69.3% |
| 3907410 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.55 | 47.0 | 3.77e-01 | 99.1% | 82.7% |
| 5004339 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.57e-01 | 80.2% | 57.7% |
| 3879038 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.53 | 40.0 | 4.04e-01 | 85.6% | 81.8% |
D2
high
residues 136-189
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qp1A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.88 | 76.0 | 5.19e-01 | 94.4% | 93.3% |
| 2jpnA00 | 1.20.1280.210 | Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 | 0.86 | 77.0 | 6.75e-01 | 100.0% | 74.7% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.85 | 74.0 | 5.88e-01 | 96.3% | 65.1% |
| 3l0mA02 | 1.20.1280.280 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.81 | 71.0 | 6.34e-01 | 100.0% | 93.6% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.80 | 67.0 | 6.11e-01 | 96.3% | 78.1% |
| 6nwmA01 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.79 | 55.0 | 3.96e-01 | 74.1% | 26.5% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 54.0 | 5.26e-01 | 74.1% | 75.0% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.77 | 64.0 | 5.55e-01 | 94.4% | 86.0% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.76 | 67.0 | 6.21e-01 | 100.0% | 92.6% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.75 | 67.0 | 4.78e-01 | 100.0% | 83.9% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.72 | 50.0 | 4.75e-01 | 75.9% | 60.9% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.72 | 62.0 | 6.01e-01 | 100.0% | 95.1% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.72 | 62.0 | 4.93e-01 | 100.0% | 73.7% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.71 | 51.0 | 4.03e-01 | 75.9% | 39.8% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.69 | 58.0 | 4.87e-01 | 98.1% | 97.9% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 60.0 | 5.41e-01 | 100.0% | 92.0% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.68 | 56.0 | 4.84e-01 | 100.0% | 89.5% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 56.0 | 4.28e-01 | 98.1% | 93.5% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.67 | 54.0 | 4.50e-01 | 98.1% | 62.6% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 53.0 | 4.01e-01 | 98.1% | 92.6% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 53.0 | 3.93e-01 | 98.1% | 88.5% |
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.62 | 54.0 | 4.18e-01 | 98.1% | 44.3% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 49.0 | 4.05e-01 | 96.3% | 70.7% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.61 | 42.0 | 2.97e-01 | 72.2% | 22.2% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 50.0 | 4.64e-01 | 100.0% | 88.9% |
| 2d5wA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 39.0 | 2.63e-01 | 70.4% | 19.0% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 43.0 | 4.04e-01 | 90.7% | 71.0% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 46.0 | 3.86e-01 | 98.1% | 85.7% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3817204 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.93 | 83.0 | 5.46e-01 | 96.3% | 26.8% |
| 4436771 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.91 | 85.0 | 6.74e-01 | 100.0% | 79.0% |
| 3810677 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.90 | 80.0 | 5.38e-01 | 94.4% | 29.1% |
| 3384110 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.90 | 81.0 | 5.45e-01 | 96.3% | 30.0% |
| 3342887 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.90 | 79.0 | 5.68e-01 | 100.0% | 36.4% |
| 3816578 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.90 | 82.0 | 5.34e-01 | 96.3% | 40.5% |
| 3969324 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.90 | 81.0 | 5.47e-01 | 98.1% | 93.3% |
| 3818955 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.90 | 81.0 | 4.55e-01 | 96.3% | 14.7% |
| 4209872 | 109.4.1.3453 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30334, PF30337 | 0.90 | 76.0 | 4.12e-01 | 98.1% | 5.6% |
| 3645380 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.89 | 77.0 | 5.15e-01 | 96.3% | 27.0% |
| 3823720 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 79.0 | 6.23e-01 | 96.3% | 77.1% |
| 3262288 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.89 | 78.0 | 7.49e-01 | 100.0% | 85.0% |
| 3372661 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.89 | 80.0 | 5.18e-01 | 96.3% | 38.5% |
| 3831220 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.89 | 77.0 | 5.45e-01 | 94.4% | 34.5% |
| 3327326 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.88 | 79.0 | 4.39e-01 | 96.3% | 12.8% |
| 3433875 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.88 | 72.0 | 5.07e-01 | 100.0% | 31.0% |
| 3815642 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.88 | 79.0 | 5.11e-01 | 96.3% | 24.8% |
| 3816405 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.88 | 79.0 | 4.38e-01 | 96.3% | 13.2% |
| 3362071 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.87 | 78.0 | 5.10e-01 | 96.3% | 38.0% |
| 3667701 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.87 | 75.0 | 4.57e-01 | 92.6% | 16.7% |
| 3375916 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.87 | 75.0 | 5.98e-01 | 92.6% | 77.0% |
| 3421106 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.86 | 76.0 | 4.21e-01 | 94.4% | 7.9% |
| 3328097 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 77.0 | 5.78e-01 | 96.3% | 65.0% |
| 3356412 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.86 | 79.0 | 5.31e-01 | 100.0% | 30.6% |
| 3463562 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.86 | 75.0 | 5.03e-01 | 94.4% | 42.2% |
| 3825782 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 75.0 | 5.45e-01 | 96.3% | 38.6% |
| 3423693 | 109.4.1.184 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1 | 0.85 | 74.0 | 5.04e-01 | 94.4% | 49.7% |
| 3352832 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.84 | 74.0 | 5.32e-01 | 96.3% | 56.6% |
| 3829103 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.84 | 74.0 | 5.26e-01 | 96.3% | 55.3% |
| 3434454 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.84 | 75.0 | 4.92e-01 | 98.1% | 38.1% |
| 1147633 | 640.2.1.1 ↗ | alpha arrays › Methane monooxygenase hydrolase gamma subunit-like › SidM C-terminal P4M domain › SidM C-terminal P4M domain › DrrA_P4M | 0.83 | 74.0 | 5.74e-01 | 100.0% | 62.4% |
| 3809326 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.83 | 72.0 | 4.47e-01 | 94.4% | 87.5% |
| 3650245 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.83 | 73.0 | 5.19e-01 | 96.3% | 55.3% |
| 3321993 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.83 | 71.0 | 5.51e-01 | 94.4% | 68.7% |
| 3809460 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.83 | 74.0 | 4.81e-01 | 98.1% | 35.9% |
| 3364209 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.82 | 73.0 | 4.77e-01 | 98.1% | 38.6% |
| 3310405 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.82 | 71.0 | 4.65e-01 | 100.0% | 24.2% |
| 3669606 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.82 | 71.0 | 4.50e-01 | 96.3% | 43.9% |
| 3356221 | 4030.1.1.14 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › ERAP1_C | 0.79 | 69.0 | 5.93e-01 | 98.1% | 72.9% |
| 3922386 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 70.0 | 5.70e-01 | 100.0% | 84.0% |
| 3360431 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.78 | 66.0 | 6.23e-01 | 94.4% | 89.2% |
| 4441814 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.76 | 65.0 | 6.47e-01 | 96.3% | 100.0% |
| 4047162 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.76 | 61.0 | 6.27e-01 | 88.9% | 98.0% |
| 4983638 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.74 | 62.0 | 5.81e-01 | 98.1% | 87.0% |
| 3708851 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.74 | 60.0 | 5.68e-01 | 100.0% | 76.9% |
| 3368917 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.73 | 63.0 | 4.69e-01 | 98.1% | 57.1% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.72 | 59.0 | 5.81e-01 | 98.1% | 86.7% |
| 3524904 | 109.4.1.158 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C | 0.70 | 60.0 | 3.73e-01 | 100.0% | 16.9% |
| 4962699 | 101.1.2.924 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7342 | 0.66 | 49.0 | 3.53e-01 | 83.3% | 27.9% |
| 3957483 | 243.1.1.77 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 | 0.65 | 52.0 | 4.04e-01 | 98.1% | 37.8% |
| 3994877 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 47.0 | 3.64e-01 | 77.8% | 81.7% |
| None | — | 0.64 | 46.0 | 3.01e-01 | 88.9% | 15.9% | |
| 4958656 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.62 | 49.0 | 3.24e-01 | 100.0% | 18.6% |
| 3515847 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 46.0 | 3.96e-01 | 98.1% | 84.2% |
D3
high
residues 205-260
Domain cluster:
rep: KX557277.1__AOE44324.1__SEA_EYRE_44__00044__D350-412
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hftA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 38.0 | 2.88e-01 | 80.4% | 24.4% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.66 | 55.0 | 4.91e-01 | 100.0% | 90.6% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.64 | 58.0 | 4.94e-01 | 100.0% | 67.0% |
| 2eucA00 | 1.10.8.570 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB | 0.63 | 51.0 | 4.32e-01 | 98.2% | 72.9% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.61 | 52.0 | 3.88e-01 | 98.2% | 67.3% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.60 | 51.0 | 4.21e-01 | 96.4% | 73.5% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.60 | 53.0 | 4.28e-01 | 100.0% | 81.3% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.58 | 37.0 | 3.57e-01 | 100.0% | 57.8% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.58 | 52.0 | 4.91e-01 | 100.0% | 90.9% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.58 | 45.0 | 4.07e-01 | 92.9% | 79.1% |
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 39.0 | 3.30e-01 | 73.2% | 81.0% |
| 2eo2A00 | 1.10.8.770 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 48.0 | 4.50e-01 | 100.0% | 78.9% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 47.0 | 3.50e-01 | 98.2% | 55.2% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.56 | 50.0 | 4.32e-01 | 100.0% | 89.5% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.56 | 48.0 | 3.57e-01 | 100.0% | 47.7% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 44.0 | 4.27e-01 | 96.4% | 95.5% |
| 2oifB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.23e-01 | 100.0% | 34.4% |
| 5gkoA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.02e-01 | 100.0% | 58.0% |
| 1k3xA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 46.0 | 3.59e-01 | 100.0% | 53.5% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.53 | 47.0 | 4.35e-01 | 98.2% | 80.3% |
| 4yerA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.09e-01 | 100.0% | 32.9% |
| 4hl6A02 | 3.30.1540.10 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 | 0.53 | 44.0 | 3.88e-01 | 100.0% | 77.2% |
| 2ihyA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.95e-01 | 100.0% | 26.6% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 44.0 | 3.72e-01 | 98.2% | 92.9% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.52 | 40.0 | 3.27e-01 | 85.7% | 61.1% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 41.0 | 3.15e-01 | 87.5% | 92.3% |
| 1euvA01 | 1.10.418.20 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › | 0.51 | 44.0 | 3.66e-01 | 100.0% | 64.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4869998 | 829.1.1.0 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB | 0.78 | 67.0 | 6.28e-01 | 100.0% | 80.0% |
| 5019483 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.67 | 47.0 | 3.83e-01 | 73.2% | 88.6% |
| 3721242 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.63 | 50.0 | 4.35e-01 | 85.7% | 63.1% |
| 4660492 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.59 | 50.0 | 4.73e-01 | 98.2% | 91.4% |
| 4571183 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 41.0 | 3.40e-01 | 75.0% | 58.1% |
| 5036270 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 52.0 | 4.66e-01 | 100.0% | 87.2% |
| 3178452 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 41.0 | 3.92e-01 | 75.0% | 93.8% |
| None | — | 0.57 | 43.0 | 2.86e-01 | 82.1% | 32.4% | |
| 4313858 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.57 | 46.0 | 4.35e-01 | 94.6% | 92.9% |
| 3591752 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 45.0 | 2.95e-01 | 98.2% | 22.6% |
| 3253564 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 45.0 | 3.03e-01 | 100.0% | 26.9% |
| 4066686 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.54 | 44.0 | 4.22e-01 | 98.2% | 85.7% |
| 4019332 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.54 | 42.0 | 3.66e-01 | 85.7% | 62.2% |
| 4038128 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 45.0 | 3.16e-01 | 100.0% | 30.3% |
| 3988204 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 47.0 | 3.41e-01 | 100.0% | 40.6% |
| 3651184 | 4957.1.1.7 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › MOM1 | 0.54 | 46.0 | 4.21e-01 | 100.0% | 72.0% |
| 4562528 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.53 | 45.0 | 3.12e-01 | 100.0% | 32.7% |
| 3465242 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 44.0 | 3.05e-01 | 100.0% | 30.7% |
| 4138690 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 45.0 | 3.09e-01 | 100.0% | 32.2% |
| 4683481 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 44.0 | 3.12e-01 | 100.0% | 35.1% |
| 4942098 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.52 | 40.0 | 3.72e-01 | 82.1% | 70.6% |
| 5023530 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.51 | 42.0 | 4.20e-01 | 98.2% | 91.7% |
| 3168742 | 102.2.1.1 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD | 0.51 | 43.0 | 3.60e-01 | 98.2% | 90.3% |
| 4941477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 40.0 | 3.35e-01 | 87.5% | 50.0% |
| 4615627 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.51 | 39.0 | 3.57e-01 | 83.9% | 94.7% |
| 3786420 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.51 | 43.0 | 3.57e-01 | 98.2% | 94.3% |
| 4954319 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.51 | 42.0 | 2.82e-01 | 94.6% | 55.4% |
| 3932355 | 550.1.1.0 ↗ | alpha complex topology › Her-1 › Her-1 › Her-1 | 0.51 | 39.0 | 3.01e-01 | 83.9% | 42.6% |
| 5047402 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.50 | 41.0 | 3.31e-01 | 91.1% | 76.4% |
| 3335814 | 181.1.1.13 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › Mt_ATP_synt | 0.50 | 40.0 | 3.52e-01 | 92.9% | 70.0% |