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NC_048790.1__YP_009849039.1__HWC46_gp60__00060

Bact-Vir

NC_048790.1__YP_009849039.1__HWC46_gp60__00060

Identity

Accession:
NC_048790 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Samwavirus› Corynebacterium_phage_Lederberg

TaxID: 2588502

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-118
PDB
Domain cluster: rep: KY250482.1__APQ42604.1__phi16_gp101__00101__D142-239
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22740.2 best PapZ_C 78.1 9.50e-22 100.0% 95.0%
D2 high residues 135-211
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wigA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 43.0 4.46e-01 77.9% 64.4%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.64 53.0 5.30e-01 93.5% 91.4%
5d1kB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 42.0 4.20e-01 71.4% 71.4%
2m6mA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 37.0 3.61e-01 70.1% 56.6%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 40.0 4.27e-01 71.4% 95.5%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 37.0 3.51e-01 77.9% 55.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970980 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 42.0 4.64e-01 70.1% 71.4%
3295801 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 48.0 4.61e-01 90.9% 62.2%
1002460 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.65 55.0 5.37e-01 94.8% 91.6%
3751810 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 45.0 3.82e-01 75.3% 58.4%
3489390 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 42.0 4.24e-01 70.1% 83.7%
3399231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 43.0 4.41e-01 71.4% 92.0%
3689283 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.59 43.0 4.03e-01 75.3% 72.0%
3887581 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 37.0 4.40e-01 83.1% 100.0%
3847164 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 40.0 3.88e-01 70.1% 84.7%
3477933 207.1.1.137 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.57 45.0 3.21e-01 88.3% 53.7%
3662203 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.57 39.0 3.81e-01 87.0% 63.5%
4028826 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.55 40.0 3.54e-01 87.0% 50.8%
3686679 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.55 41.0 3.93e-01 80.5% 73.3%
3357259 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.54 38.0 3.23e-01 75.3% 70.8%
3609707 377.1.1.10 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap 0.50 43.0 3.57e-01 100.0% 72.4%