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NC_048791.1__YP_009849059.1__HWC47_gp20__00020

Bact-Vir

NC_048791.1__YP_009849059.1__HWC47_gp20__00020

Identity

Accession:
NC_048791 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Samwavirus› Corynebacterium_phage_Adelaide

TaxID: 2588499

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 143-181
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02839.20 best CBM_5_12 56.0 4.50e-15 97.4% 86.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.93 87.0 6.29e-01 100.0% 41.1%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.92 75.0 7.02e-01 100.0% 72.9%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.87 75.0 7.25e-01 100.0% 86.7%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.84 67.0 6.16e-01 100.0% 68.6%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 67.0 5.43e-01 100.0% 49.3%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 55.0 5.26e-01 100.0% 68.2%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.75 64.0 5.60e-01 100.0% 77.0%
3k3sH01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.71 55.0 4.48e-01 100.0% 43.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.81e-01 100.0% 64.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.64e-01 100.0% 60.6%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 51.0 4.19e-01 92.3% 91.7%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 47.0 2.74e-01 94.9% 10.6%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.59 49.0 2.81e-01 94.9% 16.0%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.59 44.0 3.01e-01 100.0% 22.0%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 44.0 2.67e-01 100.0% 12.3%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.58 45.0 4.00e-01 100.0% 94.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.93e-01 100.0% 56.9%
3hiaA00 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.55 39.0 3.35e-01 100.0% 37.9%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.55 40.0 3.86e-01 100.0% 69.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 3.86e-01 100.0% 59.4%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.41e-01 89.7% 53.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 1.00 94.0 8.00e-01 100.0% 67.2%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 1.00 94.0 8.64e-01 100.0% 81.2%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.96 89.0 7.91e-01 100.0% 77.4%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.95 90.0 8.39e-01 100.0% 84.8%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.90 76.0 6.32e-01 100.0% 55.4%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.90 72.0 6.63e-01 100.0% 68.0%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.87 69.0 6.25e-01 100.0% 64.8%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 77.0 6.63e-01 100.0% 83.1%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 73.0 6.69e-01 100.0% 74.0%
4026053 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 69.0 6.92e-01 100.0% 87.5%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.83 73.0 6.55e-01 100.0% 81.8%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.83 71.0 6.54e-01 100.0% 76.0%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 67.0 5.43e-01 100.0% 49.3%
2966957 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 66.0 5.03e-01 100.0% 51.1%
1002430 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.75 64.0 5.60e-01 100.0% 77.0%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.03e-01 100.0% 75.6%
5062486 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 51.0 3.45e-01 87.2% 33.8%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 57.0 4.80e-01 100.0% 61.5%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.64 53.0 4.54e-01 100.0% 59.7%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 57.0 4.77e-01 100.0% 61.5%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 56.0 4.71e-01 100.0% 60.0%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 57.0 4.74e-01 100.0% 61.5%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 56.0 4.68e-01 100.0% 61.5%
1320675 304.157.1.1 ↗ a+b two layers › Alpha-beta plaits › uncharacterized protein 201phi2-1p060 › uncharacterized protein 201phi2-1p060 › DUF6837 0.62 49.0 4.07e-01 92.3% 90.4%
3710027 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 48.0 3.47e-01 89.7% 75.0%
3502375 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.61 54.0 5.18e-01 100.0% 84.4%
2138090 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 50.0 4.27e-01 100.0% 63.1%
2429140 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.71e-01 89.7% 26.2%
2761575 51.1.1.2 ↗ beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 0.58 47.0 4.05e-01 100.0% 92.8%
3814728 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.57 49.0 4.25e-01 94.9% 70.0%
3818230 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.57 51.0 4.27e-01 100.0% 67.7%
4991373 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.52 42.0 2.72e-01 100.0% 36.7%