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NC_048791.1__YP_009849075.1__HWC47_gp36__00036

Bact-Vir

NC_048791.1__YP_009849075.1__HWC47_gp36__00036

Identity

Accession:
NC_048791 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Samwavirus› Corynebacterium_phage_Adelaide

TaxID: 2588499

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-73
PDB
Domain cluster: rep: MK977714.1__QDF20225.1__SEA_BRAN_43__00043__D3-71
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ertA01 1.10.490.160 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.74 66.0 5.07e-01 100.0% 84.7%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 48.0 3.95e-01 75.3% 79.5%
3vkgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.59 47.0 4.06e-01 84.9% 59.1%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 51.0 4.40e-01 100.0% 94.9%
2cq8A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 39.0 3.85e-01 71.2% 100.0%
2zy2A02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.57 42.0 3.37e-01 78.1% 94.6%
4rv5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 51.0 3.66e-01 100.0% 64.6%
3tc1B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 43.0 2.94e-01 86.3% 58.4%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.56 48.0 3.81e-01 94.5% 88.1%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 3.88e-01 100.0% 66.2%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.55 47.0 4.36e-01 98.6% 95.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 42.0 4.02e-01 90.4% 69.3%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 49.0 3.80e-01 100.0% 56.5%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 41.0 3.26e-01 86.3% 77.9%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 4.02e-01 100.0% 59.3%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 48.0 3.81e-01 100.0% 63.3%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.53 48.0 3.78e-01 100.0% 81.7%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 46.0 3.34e-01 100.0% 66.8%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.52 43.0 3.88e-01 94.5% 96.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607341 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.70 64.0 4.12e-01 100.0% 40.3%
5076373 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.69 47.0 4.18e-01 71.2% 90.5%
4609203 5069.1.3.10 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ATP-synt_I 0.67 48.0 4.12e-01 75.3% 97.4%
5065387 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.62 43.0 3.76e-01 72.6% 93.9%
4527444 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.62 50.0 3.29e-01 90.4% 80.9%
3400106 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 54.0 4.20e-01 100.0% 46.8%
3304703 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.59 53.0 4.73e-01 97.3% 75.0%
3605990 5054.1.1.70 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 0.59 51.0 3.83e-01 98.6% 83.7%
3077432 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.58 52.0 4.39e-01 100.0% 64.5%
4030141 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.56 49.0 4.34e-01 100.0% 69.1%
3882597 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.56 48.0 4.46e-01 94.5% 83.3%
3786619 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.55 43.0 3.96e-01 84.9% 89.5%
3465074 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.55 48.0 3.95e-01 94.5% 71.2%
3440420 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.54 47.0 4.02e-01 97.3% 86.7%
3416909 3636.1.1.3 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › ARCH_RTEL1 0.54 38.0 2.93e-01 75.3% 90.0%
4242465 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.53 45.0 4.11e-01 91.8% 93.7%
4019886 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.53 48.0 3.89e-01 100.0% 86.7%
3970010 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.53 47.0 3.73e-01 100.0% 76.0%
3796634 5054.1.1.70 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 0.53 44.0 3.04e-01 94.5% 57.8%
4020871 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 46.0 3.74e-01 97.3% 65.4%
5062246 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.51 45.0 4.03e-01 100.0% 71.4%
3628151 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.51 42.0 3.20e-01 89.0% 69.1%
3417343 109.4.1.1718 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.50 42.0 3.48e-01 90.4% 87.2%