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NC_048792.1__YP_009849140.1__HWC48_gp044__00044
Bact-VirNC_048792.1__YP_009849140.1__HWC48_gp044__00044
Identity
- Accession:
- NC_048792 ↗
- Kingdom:
- phage
Quality
57.8
mean pLDDT
Taxonomy
TaxID: 2587814
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-94
Domain cluster:
rep: MW735835.1__QTH80352.1__PA10_00152__00152__D18-84
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.71 | 43.0 | 4.98e-01 | 87.3% | 86.0% |
| 3g5oA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.71 | 42.0 | 5.15e-01 | 83.1% | 100.0% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 48.0 | 3.33e-01 | 93.0% | 25.0% |
| 3jtfA01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.62 | 39.0 | 4.19e-01 | 93.0% | 75.4% |
| 2qk1A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 49.0 | 3.37e-01 | 93.0% | 27.6% |
| 2wtpA00 | 2.60.40.2280 | Mainly Beta › Sandwich › Immunoglobulin-like › Heavy-metal resistance protein CzcE | 0.57 | 37.0 | 3.39e-01 | 97.2% | 49.5% |
| 3vseB02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.57 | 37.0 | 3.39e-01 | 90.1% | 48.0% |
| 1hkqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.22e-01 | 74.6% | 88.0% |
| 6en3A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 45.0 | 2.94e-01 | 95.8% | 44.4% |
| 3orgA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 46.0 | 3.77e-01 | 100.0% | 54.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 40.0 | 3.72e-01 | 93.0% | 67.0% |
| 7zdtD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.00e-01 | 93.0% | 87.6% |
| 3eoeD01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.51 | 40.0 | 3.29e-01 | 87.3% | 65.0% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 45.0 | 3.53e-01 | 100.0% | 56.6% |
| 3d31A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 2.92e-01 | 91.5% | 82.3% |
| 1rjhA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 41.0 | 3.53e-01 | 93.0% | 84.7% |
| 3fhmA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 44.0 | 3.59e-01 | 100.0% | 57.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4115104 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.76 | 47.0 | 5.07e-01 | 87.3% | 73.3% |
| 3979098 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.75 | 48.0 | 4.79e-01 | 93.0% | 62.7% |
| 3954634 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.74 | 45.0 | 4.28e-01 | 90.1% | 52.4% |
| 3956773 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.73 | 46.0 | 4.42e-01 | 90.1% | 56.2% |
| 3953259 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.72 | 44.0 | 4.79e-01 | 88.7% | 73.3% |
| 4615399 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.70 | 44.0 | 4.28e-01 | 90.1% | 57.5% |
| 3385734 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.68 | 45.0 | 4.74e-01 | 90.1% | 75.4% |
| 4994421 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.67 | 45.0 | 3.64e-01 | 100.0% | 36.0% |
| 3959587 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.64 | 47.0 | 3.88e-01 | 100.0% | 43.1% |
| 3721573 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.59 | 46.0 | 3.64e-01 | 97.2% | 40.0% |
| 4365754 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.56 | 45.0 | 3.29e-01 | 90.1% | 44.6% |
| 4570247 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.55 | 45.0 | 2.81e-01 | 90.1% | 49.5% |
| 4028354 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.54 | 44.0 | 2.98e-01 | 90.1% | 52.2% |
| 3645661 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.54 | 39.0 | 2.52e-01 | 87.3% | 15.1% |
| None | — | 0.53 | 43.0 | 2.85e-01 | 90.1% | 41.2% | |
| 3305306 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.52 | 37.0 | 2.73e-01 | 74.6% | 50.3% |
| 3838181 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.52 | 46.0 | 3.36e-01 | 98.6% | 65.6% |
| 3672161 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 38.0 | 2.55e-01 | 78.9% | 20.3% |
| 3786050 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.51 | 42.0 | 3.80e-01 | 94.4% | 89.5% |
| 3741548 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 42.0 | 2.84e-01 | 91.5% | 67.7% |
| 4166325 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 43.0 | 2.97e-01 | 94.4% | 81.2% |
| 3252502 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.51 | 41.0 | 3.50e-01 | 91.5% | 70.2% |
| 1517806 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.50 | 39.0 | 3.33e-01 | 87.3% | 78.7% |
| 3611373 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 42.0 | 3.43e-01 | 94.4% | 57.1% |
D2
medium
residues 95-170