←Back to structures

NC_048792.1__YP_009849274.1__HWC48_gp236__00178

Bact-Vir

Identity

Accession:: NC_048792 ↗
Kingdom:: phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Moabitevirus› Serratia_phage_Moabite

TaxID: 2587814

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 125-293

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.64	48.0	5.23e-01	82.2%	94.2%
1tu9A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.63	47.0	5.19e-01	81.1%	99.2%
1h6gA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.62	37.0	4.23e-01	82.8%	79.0%
1vw4T01	6.10.330.20	Special › Helix non-globular › Monooxygenase ›	0.60	37.0	4.46e-01	80.5%	92.0%
4ocqA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.60	47.0	4.17e-01	82.2%	87.5%
3kmiA00	1.20.120.940	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Putative aromatic acid exporter, C-terminal domain	0.59	37.0	3.68e-01	85.2%	60.5%
1st6A01	1.20.120.810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle	0.58	34.0	2.93e-01	82.8%	36.5%
1oahA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	29.0	3.20e-01	93.5%	57.7%
3k3uA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	44.0	4.81e-01	80.5%	99.3%
1b8dA00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.57	42.0	4.28e-01	76.3%	78.0%
3bt5A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.57	36.0	3.81e-01	81.1%	70.2%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.57	35.0	4.26e-01	82.2%	96.3%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	33.0	4.17e-01	78.7%	100.0%
1zvzA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.54	38.0	4.39e-01	97.6%	96.0%
2fzfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	34.0	3.63e-01	82.2%	70.0%
2wdqD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.52	32.0	3.94e-01	75.1%	98.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3923273	206.1.1.44 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679	0.58	45.0	3.39e-01	80.5%	86.6%
3936985	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.58	42.0	4.41e-01	74.0%	96.1%
3247061	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.55	44.0	3.20e-01	83.4%	66.9%
3622094	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.53	39.0	4.09e-01	89.3%	83.2%
3580282	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	35.0	4.01e-01	79.9%	97.5%
3814234	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.51	37.0	4.21e-01	85.8%	97.7%

D2 medium residues 20-102_453-493

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yz5B00	1.20.190.20	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain	0.59	37.0	3.03e-01	89.5%	33.2%
1d5aA02	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.59	36.0	3.04e-01	88.7%	35.5%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.53	38.0	3.90e-01	93.5%	76.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3288903	150.8.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE	0.60	42.0	3.78e-01	89.5%	51.4%
3252194	5001.1.1.23 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GOST_TM	0.54	47.0	3.67e-01	94.4%	70.8%
3680593	5001.1.1.23 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GOST_TM	0.53	47.0	3.57e-01	95.2%	72.1%

D3 medium residues 103-124_294-371

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pe0A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	33.0	3.29e-01	99.0%	48.1%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.57	33.0	3.32e-01	97.0%	55.3%
2i7uA00	6.10.250.1010	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.56	32.0	3.83e-01	100.0%	88.7%
3sjqC00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	30.0	3.34e-01	91.0%	66.3%
4wqoD00	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.51	33.0	2.93e-01	98.0%	45.4%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3977737	3831.1.1.1 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI	0.58	36.0	3.44e-01	100.0%	53.0%
3944950	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.56	32.0	3.92e-01	99.0%	86.2%
3942983	101.1.4.8 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76	0.56	30.0	2.59e-01	95.0%	34.0%
3236866	1135.1.1.3 ↗	a+b complex topology › Immune Mapped Protein 2 (IMP2) › Immune Mapped Protein 2 (IMP2) › Immune Mapped Protein 2 (IMP2) › CytochromB561_N	0.55	38.0	3.93e-01	100.0%	74.7%
4427252	3831.1.1.1 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI	0.52	36.0	3.54e-01	100.0%	66.7%

D4 medium residues 372-452

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6pmiF01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.68	55.0	5.61e-01	96.3%	92.5%
4ghnA01	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.67	52.0	4.68e-01	98.8%	61.3%
1rp3A01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.66	54.0	5.39e-01	96.3%	87.1%
6gyhA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.66	50.0	3.67e-01	82.7%	66.7%
2e9fB01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.63	52.0	5.02e-01	100.0%	80.2%
4cxfA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.61	52.0	5.12e-01	96.3%	88.5%
1or7B01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.59	48.0	4.66e-01	95.1%	79.8%
4akgA06	1.10.8.710	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain	0.59	51.0	4.72e-01	100.0%	87.9%
1tf5A04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.58	47.0	3.67e-01	90.1%	94.0%
1ow4A00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.56	40.0	3.53e-01	91.4%	50.8%
6aqgD02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.56	49.0	3.24e-01	100.0%	59.9%
2iaiA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	47.0	4.00e-01	95.1%	73.5%
1jkwA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	45.0	4.30e-01	95.1%	88.1%
1m6nA04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.53	45.0	3.88e-01	97.5%	69.6%
3pf0A00	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.52	44.0	3.05e-01	100.0%	28.9%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
61904	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.66	54.0	5.39e-01	96.3%	87.2%
4213337	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.64	53.0	5.00e-01	100.0%	75.0%
3281424	3755.3.1.299 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445	0.63	43.0	3.44e-01	71.6%	41.2%
4984864	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.62	51.0	4.71e-01	100.0%	69.1%
4291782	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.62	52.0	4.76e-01	100.0%	70.0%
4114241	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.62	51.0	4.87e-01	98.8%	77.0%
3684818	4952.1.1.1 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1	0.61	52.0	4.68e-01	100.0%	68.7%
4092989	7061.1.1.0 ↗	few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module	0.60	45.0	4.70e-01	96.3%	89.3%
3365581	4952.1.1.1 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1	0.60	49.0	4.47e-01	98.8%	66.1%
4951785	141.1.1.1 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt	0.59	50.0	3.56e-01	100.0%	41.7%
4976222	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.59	49.0	4.55e-01	98.8%	70.9%
3105650	191.1.1.26 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24	0.58	49.0	4.32e-01	96.3%	83.3%
2389466	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.57	47.0	4.67e-01	96.3%	90.6%
3959099	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.57	48.0	4.17e-01	96.3%	80.8%
3319168	3922.1.1.163 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Not3	0.55	47.0	4.11e-01	98.8%	73.1%
1068652	3719.1.1.1 ↗	alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like › Peptidase_M75	0.52	44.0	3.05e-01	100.0%	28.9%
3281875	191.1.1.48 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46	0.51	44.0	3.84e-01	100.0%	82.3%
3228000	605.4.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein	0.51	39.0	4.03e-01	84.0%	96.0%
4090827	321.1.1.7 ↗	a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2	0.51	44.0	2.91e-01	100.0%	62.4%