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NC_048792.1__YP_009849396.1__HWC48_gp114__00300

Bact-Vir

NC_048792.1__YP_009849396.1__HWC48_gp114__00300

Identity

Accession:
NC_048792 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Moabitevirus› Serratia_phage_Moabite

TaxID: 2587814

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-12_31-114
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 45.0 3.90e-01 82.3% 82.9%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 41.0 3.30e-01 78.1% 95.3%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 37.0 3.50e-01 71.9% 87.9%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.53 33.0 3.23e-01 81.2% 57.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4568123 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.76 64.0 5.22e-01 90.6% 70.9%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 55.0 4.89e-01 76.0% 97.7%
4989442 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.74 63.0 5.00e-01 90.6% 67.4%
3163931 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.74 64.0 5.46e-01 94.8% 78.7%
4955468 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.73 63.0 4.99e-01 92.7% 68.8%
4009698 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.72 55.0 4.27e-01 80.2% 89.3%
5056041 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 61.0 4.41e-01 94.8% 69.8%
3804711 219.1.1.113 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.68 57.0 4.16e-01 89.6% 94.9%
3399872 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 56.0 4.42e-01 92.7% 99.5%
3397758 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 52.0 4.03e-01 92.7% 91.4%
3823449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 45.0 3.16e-01 76.0% 92.1%
3967126 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.58 45.0 3.99e-01 84.4% 82.8%
4031252 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 44.0 4.46e-01 85.4% 81.1%
4368957 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.57 44.0 3.83e-01 84.4% 80.6%
3360341 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.55 44.0 3.49e-01 88.5% 83.9%
4033311 4160.1.1.1 ↗ beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Peptidase_M29 0.55 42.0 3.29e-01 85.4% 88.4%
3856901 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 43.0 3.01e-01 88.5% 93.1%
4969668 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 40.0 3.49e-01 82.3% 71.3%
3846124 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 38.0 2.76e-01 82.3% 71.6%
3551291 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.51 38.0 2.82e-01 83.3% 73.8%
3573009 5.1.5.193 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Ldl_recept_b 0.50 36.0 2.62e-01 78.1% 70.0%
D2 medium residues 13-30_115-173
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.67 35.0 4.49e-01 97.4% 90.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 46.0 4.13e-01 72.7% 87.2%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 40.0 2.96e-01 100.0% 23.5%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 46.0 4.06e-01 71.4% 86.2%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.66 38.0 4.66e-01 100.0% 91.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 39.0 3.32e-01 100.0% 38.1%
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 44.0 3.94e-01 72.7% 53.9%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 39.0 3.81e-01 100.0% 55.3%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 47.0 3.54e-01 79.2% 67.3%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.62 56.0 3.21e-01 100.0% 34.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 39.0 4.72e-01 100.0% 100.0%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 44.0 4.63e-01 75.3% 95.5%
1xl7A01 1.10.275.20 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase 0.61 36.0 3.31e-01 71.4% 43.7%
3sk9A00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.60 54.0 3.85e-01 100.0% 70.4%
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.60 39.0 4.44e-01 75.3% 96.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 46.0 4.48e-01 84.4% 75.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 39.0 4.17e-01 100.0% 77.6%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.15e-01 98.7% 69.1%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.59 40.0 3.25e-01 100.0% 38.3%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 51.0 4.27e-01 100.0% 66.0%
4q2cA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.59 51.0 3.60e-01 100.0% 74.5%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 51.0 4.78e-01 100.0% 83.2%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 36.0 3.86e-01 100.0% 73.1%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 41.0 3.92e-01 76.6% 74.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 40.0 3.61e-01 75.3% 89.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 4.30e-01 100.0% 89.7%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.56 46.0 3.48e-01 90.9% 36.3%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 41.0 4.10e-01 76.6% 92.2%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.20e-01 76.6% 67.3%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.55 39.0 3.47e-01 76.6% 67.5%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.55 34.0 3.05e-01 100.0% 43.0%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.54 38.0 3.13e-01 100.0% 39.9%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.65e-01 88.3% 57.6%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.54 38.0 3.08e-01 74.0% 54.8%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 39.0 3.97e-01 76.6% 98.6%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.53 39.0 3.04e-01 76.6% 77.4%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.71e-01 97.4% 71.4%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.53 38.0 3.92e-01 100.0% 76.3%
4iu9A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 41.0 2.71e-01 90.9% 75.0%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 3.42e-01 97.4% 50.5%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 36.0 3.73e-01 89.6% 75.7%
3dxqB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 44.0 3.25e-01 96.1% 37.9%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 42.0 2.84e-01 92.2% 82.8%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.51 45.0 3.71e-01 100.0% 68.5%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 43.0 3.17e-01 98.7% 61.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3655744 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 53.0 4.90e-01 72.7% 63.2%
4016725 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 52.0 4.95e-01 76.6% 65.6%
5053551 3241.1.1.1 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.69 59.0 4.31e-01 94.8% 89.5%
5002888 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.64 47.0 3.89e-01 76.6% 46.7%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.64 55.0 5.13e-01 100.0% 76.8%
3623002 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.63 53.0 4.81e-01 100.0% 68.6%
3204604 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.63 38.0 3.91e-01 97.4% 62.7%
4358621 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.62 43.0 4.29e-01 71.4% 79.7%
3176029 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.61 37.0 3.69e-01 70.1% 56.2%
3188839 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.60 43.0 2.99e-01 75.3% 65.7%
3922386 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 42.0 3.91e-01 75.3% 85.0%
3828317 101.1.10.18 ↗ alpha arrays › HTH › HTH › Cyclin-like › BRF2-like_C_cyclin_rpt 0.59 52.0 4.25e-01 100.0% 69.3%
4569730 5069.1.1.74 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › UPF0093 0.59 42.0 3.26e-01 75.3% 58.9%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 41.0 3.53e-01 74.0% 80.8%
4024538 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.58 52.0 3.87e-01 98.7% 52.1%
5052161 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.58 51.0 3.41e-01 100.0% 86.7%
3531576 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.58 39.0 4.11e-01 97.4% 75.7%
4457423 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 46.0 3.00e-01 87.0% 33.7%
3409435 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.57 48.0 4.51e-01 93.5% 80.0%
4421867 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 41.0 3.35e-01 76.6% 50.0%
4958436 2008.1.1.217 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.57 50.0 2.77e-01 98.7% 91.8%
5063374 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 47.0 3.96e-01 92.2% 67.4%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.57 46.0 4.46e-01 92.2% 82.2%
3691337 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.56 40.0 2.90e-01 75.3% 77.2%
3623892 150.1.1.109 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › LUC7 0.56 45.0 3.68e-01 92.2% 77.4%
4370167 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.55 49.0 3.64e-01 100.0% 52.5%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 47.0 4.05e-01 98.7% 58.5%
3214130 604.5.1.76 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ICAT 0.55 45.0 3.80e-01 94.8% 57.1%
5020685 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 47.0 3.10e-01 100.0% 23.1%
3879957 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.54 39.0 2.78e-01 76.6% 63.7%
3543090 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 39.0 3.54e-01 76.6% 91.4%
5042711 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 45.0 3.77e-01 98.7% 53.1%
3284904 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.53 43.0 3.17e-01 90.9% 70.5%
3472753 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 3.01e-01 100.0% 23.8%
3631429 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 38.0 3.04e-01 76.6% 58.1%
60156 109.10.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.52 46.0 3.38e-01 100.0% 53.1%
3916041 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.52 39.0 3.26e-01 80.5% 75.6%
3832196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.95e-01 93.5% 72.4%
3640833 109.4.1.442 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N 0.51 41.0 3.44e-01 89.6% 59.3%
3359325 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.50 37.0 3.17e-01 98.7% 48.0%