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NC_048797.1__YP_009850078.1__HWC53_gp172__00133

Bact-Vir

NC_048797.1__YP_009850078.1__HWC53_gp172__00133

Identity

Accession:
NC_048797 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Goettingenvirus› Bacillus_phage_vB_BmeM-Goe8

TaxID: 2593638

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-92
PDB
Domain cluster: rep: KF669652.1__AGY47410.1__Grass_145__00145__D15-106
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 47.0 5.16e-01 98.6% 76.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 48.0 4.83e-01 100.0% 64.4%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.76 47.0 5.12e-01 100.0% 78.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 45.0 5.35e-01 100.0% 93.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.74 48.0 4.31e-01 100.0% 50.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 4.93e-01 100.0% 73.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 41.0 5.07e-01 93.2% 91.3%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 5.13e-01 97.3% 91.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 45.0 5.23e-01 100.0% 90.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 46.0 3.87e-01 100.0% 39.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 47.0 5.03e-01 100.0% 85.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.91e-01 100.0% 78.8%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 45.0 3.99e-01 100.0% 49.1%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 4.09e-01 71.6% 90.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.52e-01 100.0% 70.9%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 52.0 5.17e-01 100.0% 85.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 55.0 4.74e-01 100.0% 88.4%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 54.0 4.82e-01 100.0% 93.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 32.0 3.38e-01 86.5% 52.2%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 39.0 3.50e-01 100.0% 44.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.90e-01 100.0% 96.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.66e-01 100.0% 89.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.74e-01 100.0% 95.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.38e-01 100.0% 80.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.00e-01 100.0% 64.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.76e-01 100.0% 96.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 4.54e-01 100.0% 96.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.58 45.0 4.10e-01 98.6% 62.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.06e-01 100.0% 71.6%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.94e-01 100.0% 67.1%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 4.19e-01 100.0% 96.5%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 4.26e-01 87.8% 93.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.17e-01 91.9% 95.1%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.11e-01 100.0% 81.4%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.55 45.0 3.78e-01 98.6% 52.3%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 4.34e-01 91.9% 100.0%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 48.0 3.55e-01 100.0% 38.5%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.53 45.0 4.01e-01 97.3% 94.6%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.39e-01 98.6% 51.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.53 45.0 3.73e-01 97.3% 63.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 3.96e-01 100.0% 75.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.21e-01 100.0% 91.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.45e-01 100.0% 51.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 3.88e-01 98.6% 76.9%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.24e-01 86.5% 95.4%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.23e-01 78.4% 86.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 4.19e-01 97.3% 100.0%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.90e-01 89.2% 83.1%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 34.0 3.36e-01 85.1% 62.7%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.99e-01 100.0% 88.6%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 4.13e-01 100.0% 93.7%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 43.0 3.47e-01 100.0% 87.5%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.13e-01 82.4% 76.1%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 36.0 3.39e-01 77.0% 83.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972872 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.82 48.0 6.03e-01 100.0% 97.8%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 49.0 5.27e-01 100.0% 73.8%
3710131 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.75 67.0 5.38e-01 100.0% 58.3%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 67.0 5.29e-01 100.0% 56.0%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 45.0 4.66e-01 98.6% 67.1%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 46.0 5.02e-01 100.0% 83.9%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.68 53.0 4.85e-01 100.0% 65.3%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 44.0 4.60e-01 100.0% 73.9%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 46.0 3.73e-01 100.0% 40.7%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.96e-01 100.0% 77.6%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 44.0 4.18e-01 100.0% 63.5%
3778124 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 43.0 4.61e-01 100.0% 83.1%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 43.0 4.60e-01 100.0% 83.1%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 43.0 4.53e-01 100.0% 83.1%
5026837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 3.84e-01 100.0% 56.7%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 43.0 3.17e-01 100.0% 28.9%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.58e-01 100.0% 85.9%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.61 43.0 3.26e-01 100.0% 32.4%
4056584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.21e-01 100.0% 68.8%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 44.0 4.31e-01 100.0% 72.2%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.60 47.0 4.39e-01 100.0% 67.4%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 42.0 4.24e-01 100.0% 73.3%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.30e-01 100.0% 74.7%
3466470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.29e-01 100.0% 73.1%
3385856 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.59 45.0 4.90e-01 100.0% 96.8%
3925634 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 47.0 4.82e-01 100.0% 91.4%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.85e-01 100.0% 78.9%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 46.0 4.65e-01 100.0% 86.5%
4396355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.13e-01 100.0% 68.2%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.49e-01 100.0% 73.0%
4929056 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 44.0 4.28e-01 97.3% 75.0%
3575735 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.32e-01 100.0% 86.7%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.18e-01 100.0% 30.5%
3622909 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.23e-01 100.0% 86.7%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.24e-01 100.0% 86.2%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.03e-01 100.0% 56.7%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.56 49.0 4.10e-01 100.0% 58.3%
4031029 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.56 50.0 3.77e-01 100.0% 50.9%
3784612 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.55 47.0 3.58e-01 100.0% 40.6%
5033173 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 47.0 4.26e-01 100.0% 97.2%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 42.0 4.25e-01 98.6% 82.7%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 40.0 4.16e-01 100.0% 84.3%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 42.0 4.48e-01 100.0% 95.4%
3732839 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.54 46.0 4.02e-01 100.0% 71.7%
3295847 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 43.0 3.84e-01 86.5% 69.5%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 39.0 4.03e-01 100.0% 85.3%
2491331 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 44.0 3.59e-01 100.0% 87.8%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.10e-01 97.3% 90.8%
3170922 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 37.0 3.84e-01 94.6% 80.9%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.54e-01 98.6% 96.0%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.53 40.0 3.99e-01 100.0% 77.5%
4032409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.19e-01 100.0% 85.3%
3705968 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 43.0 3.47e-01 100.0% 46.2%
2124792 2.1.1.97 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ID 0.52 36.0 3.92e-01 87.8% 85.7%
3923115 4004.1.1.5 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc 0.52 45.0 3.40e-01 100.0% 94.8%
4519565 4139.1.1.0 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like 0.52 46.0 3.86e-01 100.0% 57.6%
None — 0.52 45.0 3.05e-01 100.0% 28.0%
5062443 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 4.23e-01 95.9% 94.1%
3978088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.77e-01 100.0% 84.6%
3253595 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 42.0 3.34e-01 90.5% 88.4%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 37.0 3.77e-01 98.6% 81.4%
3611709 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.42e-01 100.0% 46.0%
4582543 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.51 41.0 3.80e-01 86.5% 72.6%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.18e-01 100.0% 77.7%
3408652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.11e-01 100.0% 39.4%
3671007 12.3.1.38 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Rhamnogal_lyase 0.51 37.0 2.53e-01 79.7% 83.5%
3378824 4210.1.1.2 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PHL 0.50 44.0 4.19e-01 100.0% 80.9%